Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0490 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGGATGAGGAAGAGAAAGCGACGGTGATGGAGGTTCTGGGACGTGGAGCGTTCGATTACTTGGTGGCGAATTCGGTTTCGAACGAGAATCTGTTAATGGCGTTCGGGTGTGGCGAGAATATGCAGAACAAGCTCTCGGATCTCGTGGAGCGACCCAACTCGTCGAACTTCAGTTGGAACTACGCCATCTTCTGGCAAATTTCGCAGTCCAAGTATGGGGATTGGGTTTTGGGGTGGGGAGATGGGTGTTGTAGGGAGCCAAGAGAGGGAGAAGAGGGTGGTGGAGAAGTGAGAAGGGTTAGGGTTGTTTTTGATGATGATGATGAGAAGGTGCAGAGGATGAGGAAGGGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGATGAGGACAATTATGCTTTTGGGTTGGACCGCGTGACCGACACAGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGGGGGCTTGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGGTTTCGGATGTGTTGAAATCTAGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGGATTCAGACTGTTGTTTTAGTGCCTACTGATTTTGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTTGGTGAGAGTTTTGAGTTGTTGCAGGCTGTGAAATCTGTGTTTTCTGCACAGGCATCATCATTATTAGTCCCCCACATGGTTAAGCCAATTGCACCGTTGGATTTGGTGAGGGAAAAGAGAGATGGGAGTGAGAGTGCAAATGCTCTTTTATCTGGTTTGGCAATTGGGGATAAGAATAAGAATATTAATAACAATAGTAGAGTAGAGGGAATTGGAGTTCCGAAGATTTTTGGGCAGGATTTGAATTGTGTGACTCAATTTAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCGAGGCCATGGGGAGGCCATCCCCCCAATGTGAATAGTATTGGCTTTCCGAACGGTGTTCAGGGTTCTAGTTGGGGGGCTGGTCAAGTTGTGAGGCATCTTGGTCCTCCTGAAATGCTTGCTCCTAGGTTGGCCAGCTCCGGCACATTGCCAAAGCTGGCCAATGGTGCGAGGCATGACTTTGTGCATAACAACTTTGAGCAGCAACGGCCGGTACAGATGCAAATTGATTTCTCAGGAGCCACTTCGAGGGCAGCTTCTGGGAGATCAATAATTGCCGAGTCTGAGATTTCTGATGTTGAGGCGACGTGCAAGGAGGAGAGAGTTAGTGTTGCCGATGACAGGAGGCCGAGGAAGCGGGGGAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCATTGCGAGCTGTTGTTCCAAATATCTCTAAGATGGACAAGGCATCACTGTTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCAAAACTCAAGACCATAGAATCTGAGAGAGAGAGGTTTGGAAGCACCTCTATGGATGGACCAGAATTGGAGGCCAATGCAAGAGTAGAAAATCATCATAATGGAACTCCTGATGTGGATGTTCAAGTTGCACAAGATGGGGTCATTGTAAAGGTGAGCTGTCCTATTGATGTTCACCCAGTTTCAAAAGTCATTCAAACCTTTAAAGATGCAGAAATTGGTGTTGTTGAATCAAAAGTTACTGCTACAAATGTTTCTGTTTTCCATACATTTGTAGTTAAATCCCAAGGACCTGATCAGCTGACAAAGGATAAGTTGATTGCGTTGTTTTCCAAAGAATCCAGCACCATAAAGACATTATGA 1881 0.4753 MKIEVGLGGVWDEEEKATVMEVLGRGAFDYLVANSVSNENLLMAFGCGENMQNKLSDLVERPNSSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPREGEEGGGEVRRVRVVFDDDDEKVQRMRKGVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWVSDVLKSSFDYCVRSFLAKSAGIQTVVLVPTDFGVVEMGSVRMVGESFELLQAVKSVFSAQASSLLVPHMVKPIAPLDLVREKRDGSESANALLSGLAIGDKNKNINNNSRVEGIGVPKIFGQDLNCVTQFREKLAVRKMEERPRPWGGHPPNVNSIGFPNGVQGSSWGAGQVVRHLGPPEMLAPRLASSGTLPKLANGARHDFVHNNFEQQRPVQMQIDFSGATSRAASGRSIIAESEISDVEATCKEERVSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTIESERERFGSTSMDGPELEANARVENHHNGTPDVDVQVAQDGVIVKVSCPIDVHPVSKVIQTFKDAEIGVVESKVTATNVSVFHTFVVKSQGPDQLTKDKLIALFSKESSTIKTL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0490 626 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 242 IPR025610 -
Gso7g0490 626 PANTHER MYC 1 621 IPR045084 GO:0003700|GO:0006355
Gso7g0490 626 Gene3D - 449 521 IPR036638 GO:0046983
Gso7g0490 626 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 621 - -
Gso7g0490 626 Coils Coil 502 522 - -
Gso7g0490 626 Pfam Helix-loop-helix DNA-binding domain 460 506 IPR011598 GO:0046983
Gso7g0490 626 MobiDBLite consensus disorder prediction 435 461 - -
Gso7g0490 626 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 456 505 IPR011598 GO:0046983
Gso7g0490 626 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 519 IPR036638 GO:0046983
Gso7g0490 626 SMART finulus 462 511 IPR011598 GO:0046983
Gso7g0490 626 CDD bHLH_AtAIB_like 453 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0490 Gso-Chr7 4921053 4923972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0490 10 621 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.200 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g0490 bHLH-MYC_N 1.6e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0490 - - gmx:100807078 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0490 7 4921053 4923972 Gso7g0490 7 4921053 4923972 ECH
Gso7g0490 7 4921053 4923972 Gso16g0196 16 2291004 2293761 GST
Gso19g2158 19 50058209 50060734 Gso7g0490 7 4921053 4923972 PCT
Gso3g2200 3 47172677 47175008 Gso7g0490 7 4921053 4923972 PCT
Gso7g0490 7 4921053 4923972 Gso19g2158 19 50058209 50060734 PCT
Gso7g0490 7 4921053 4923972 Gso3g2200 3 47172677 47175008 PCT