Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0489 ATGGAGCAAGAGCTTCCAAGCAGTAGCGTCCCCGACGACGCCACCGCCGCTACCACGAGCTCCGTTGACAAGCCCGCCACTCCTCACGCCGGAGGCACCCGCCACCCGCTCTTCCGCGGCGTCCGCAAGCGCCGCTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCGAGGAAAAAGTCACGCATATGGCTCGGCTCCTTCCCGGCGCCGGAGATGGCGGCGAAGGCCTACGACGTTGCCGCCTACTGCCTCAAGGGCTGCAAGGCGCAGCTCAACTTCCCCGACGAGGTCCACCGGCTTCCGCCGCTCCCCTCCTCCTGCACCGCCCGGGACATCCAGGCCGCCGCAGCCAAGGCCGCCCACATGATGATGGTCCAGGCTGCCTCCGCCGACTCGCCGGAGAAAAGCAGCAGCATTACCTCCGACTGCGACGGCAGCGGTGGTGACGACTTCTGGGGCGAAATTGAGCTGCCAGAACTGCTCAACGGCAAGTGGTGGGCCTCCGACCGCCACGTAACGCCGTGGCCGGAGACTGAGCTTCCGCCCCAGCTGCCCTTCACCACGGCGTGCTTGTAG 576 0.6719 MEQELPSSSVPDDATAATTSSVDKPATPHAGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGCKAQLNFPDEVHRLPPLPSSCTARDIQAAAAKAAHMMMVQAASADSPEKSSSITSDCDGSGGDDFWGEIELPELLNGKWWASDRHVTPWPETELPPQLPFTTACL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0489 191 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Gso7g0489 191 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Gso7g0489 191 MobiDBLite consensus disorder prediction 1 26 - -
Gso7g0489 191 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Gso7g0489 191 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Gso7g0489 191 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Gso7g0489 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 191 - -
Gso7g0489 191 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Gso7g0489 191 MobiDBLite consensus disorder prediction 1 39 - -
Gso7g0489 191 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Gso7g0489 191 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Gso7g0489 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0489 Gso-Chr7 4894295 4895147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0489 33 165 AP2-EREBP Transcription Factor Family AT1G01250 65.441 5.85e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso7g0489 AP2 6.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0489 K09286 - gmx:100806544 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0489 7 4894295 4895147 Gso7g0489 7 4894295 4895147 ECH
Gso7g0489 7 4894295 4895147 Gso16g0195 16 2270653 2271526 GST
Gso19g2159 19 50073864 50074561 Gso7g0489 7 4894295 4895147 PCT
Gso3g2201 3 47185077 47185831 Gso7g0489 7 4894295 4895147 PCT
Gso7g0489 7 4894295 4895147 Gso19g2159 19 50073864 50074561 PCT
Gso7g0489 7 4894295 4895147 Gso3g2201 3 47185077 47185831 PCT