Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0480 ATGGGAAGGGCTCCTTGTTGTTCCAAAGTGGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACCAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCAGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGGAACATAACACCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGAAACAGATGGTCCCTCATAGCAGGAAGGTTACCAGGGAGAACAGACAATGAAATAAAGAACTATTGGAACACCCATCTAAGCAAAAAGCTGAAAATTCAAGGAACAGAAGACACAGACACACACAACATGTTAGAGAATCCTCAAGAAGAGCCAGCCAGTGATGGTGGCAACAACAACAAAAAGAAGAAGAAGAACGGTGGCAAAAAGAAGAACAAAGGCAAAGACAATGCTGAGCCACCAAAGACCCAAGTTTACCTACCAAAACCAATTAGAGTGAAGGCTATGTATTTACAGAGAACGGATAGTAACACCTTCACCTTTGATTCCAATTCCAATTCTGCTAGTGGATCAACAAGCCAAGAGAAGGATGAAAGCCCCGTGACAAAAGAATCAAACGTGGTTAGTGAAGTTGGTAATGTGGGAGAAGAAAGTGATGGTTTTGGCTTCTTCAGTGAGGACCATGACTTAGTCAACGCCTCAGATATTGAATGCCAATCTTATTTTCCCACATATCATGGCACCCTACAGCAACTGTATGAAGAATATTTTCAGCTCTTGAACATGGATCAAGGCCAATTCGAACGGAATTCCTTTGCAGAATCTTTATTAGAGTGA 873 0.4135 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKIQGTEDTDTHNMLENPQEEPASDGGNNNKKKKKNGGKKKNKGKDNAEPPKTQVYLPKPIRVKAMYLQRTDSNTFTFDSNSNSASGSTSQEKDESPVTKESNVVSEVGNVGEESDGFGFFSEDHDLVNASDIECQSYFPTYHGTLQQLYEEYFQLLNMDQGQFERNSFAESLLE* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0480 290 MobiDBLite consensus disorder prediction 125 176 - -
Gso7g0480 290 SMART sant 13 63 IPR001005 -
Gso7g0480 290 SMART sant 66 114 IPR001005 -
Gso7g0480 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso7g0480 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso7g0480 290 CDD SANT 16 61 IPR001005 -
Gso7g0480 290 PANTHER MYB TRANSCRIPTION FACTOR 1 281 - -
Gso7g0480 290 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 281 - -
Gso7g0480 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso7g0480 290 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso7g0480 290 MobiDBLite consensus disorder prediction 189 219 - -
Gso7g0480 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso7g0480 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso7g0480 290 CDD SANT 71 112 IPR001005 -
Gso7g0480 290 Gene3D - 14 66 - -
Gso7g0480 290 MobiDBLite consensus disorder prediction 189 208 - -
Gso7g0480 290 Gene3D - 69 131 - -
Gso7g0480 290 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0480 Gso-Chr7 4773735 4775176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0480 4 136 MYB Transcription Factor Family AT3G13540 66.667 5.46e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso7g0480 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0480 K09422 - gmx:100803345 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0480 7 4773735 4775176 Gso7g0480 7 4773735 4775176 ECH
Gso7g0480 7 4773735 4775176 Gso16g0187 16 2150013 2151418 GST
Gso19g2166 19 50126613 50129232 Gso7g0480 7 4773735 4775176 PCT
Gso3g2206 3 47223533 47225710 Gso7g0480 7 4773735 4775176 PCT
Gso7g0480 7 4773735 4775176 Gso19g2166 19 50126613 50129232 PCT
Gso7g0480 7 4773735 4775176 Gso3g2206 3 47223533 47225710 PCT