Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0474 ATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACTCGTCAATCAGAGCTCGAACGCTTGTTCGCAAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTATCAGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCATGATGGATCAAAGGCAAATCAGAAGCCAACAAAAACCCTGTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCACGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTATCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGTGACAATTATGACAGTCCTAGAAGAAGAGGGGGTTATGAGAGATCACCCAGTCCTTATCACAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGTCTATGATAGGTACAATGGTGGTGGACCAGACATGCGGAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGACTATGGCAGGCGCAGGAGTCCTGATTATGGGAAGCCCAGGAGTCCTGAATACGGTAGATATCGCAGCTGTTCACGTTCGCCGGTGCGAAGGTCGAGAACATAG 780 0.4731 MRPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHHDGSKANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRRGGYERSPSPYHRRPSPDYGRPRSPVYDRYNGGGPDMRRSPDYGRHRSPDYGRRRSPDYGKPRSPEYGRYRSCSRSPVRRSRT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0474 259 MobiDBLite consensus disorder prediction 215 241 - -
Gso7g0474 259 SMART rrm1_1 92 158 IPR000504 GO:0003723
Gso7g0474 259 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gso7g0474 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gso7g0474 259 Gene3D - 1 83 IPR012677 -
Gso7g0474 259 Gene3D - 84 173 IPR012677 -
Gso7g0474 259 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 215 - -
Gso7g0474 259 MobiDBLite consensus disorder prediction 164 195 - -
Gso7g0474 259 MobiDBLite consensus disorder prediction 164 259 - -
Gso7g0474 259 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 215 IPR029537 GO:0000398|GO:0005681
Gso7g0474 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gso7g0474 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Gso7g0474 259 SUPERFAMILY RNA-binding domain, RBD 3 164 IPR035979 GO:0003676
Gso7g0474 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0474 Gso-Chr7 4715542 4718520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0474 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 1.60e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0474 K12893 - gmx:100801043 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0474 7 4715542 4718520 Gso7g0474 7 4715542 4718520 ECH
Gso7g0474 7 4715542 4718520 Gso16g0181 16 2080592 2083636 GST