Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0472 ATGATGGTTCTAGATGTGTTATCTGGTCCTACCGGAACAGCCATTTCTCAAACTGTAGAGACCATTGCTGACTTCCTTGTTACTGCCAAGGATGTCCTTGTGAAAAAGGATAGTTTTAAGGAACTTGCTGCTTACATGGAAAGAATTAAGCCTGTCTTAGAAGAATTGAGGAAAGGAAAAGTCAGTGATTCTGAGACATTCAACCACGCCATTGAGATCATGAATAAAGAAATTAAAGATGCAAACCAACTACGTCTAGATTGCAGCAAGAAGAGCAAGGTTTATCTACTAATGAACTGCAGGTCCATAGCTAAGAGCTTAGAAGACCACACAAAACAGCTGAGTAGGGCACTTGGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAAGAAATTGAAAAGCTATGTGAAGATATGCAGACAGCTGGATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATCGAGTCAGGAATAAGAGAACACAATGTTGATCGTTCCTATGCGAATAAATTGCTAATTCTCATTGCTGATGCTGTTGGGATTAGGAATGAGAGATTAACAATAAAGAAGGAACTTGAAGAGTTTAAAAGTGAGATTGAAAATGCACGTGTTAGGAAGGACAGGGCTGAAGCTATGCAACTGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAAGGACAAGGAACGCAAATACTTTGCGAAACGCCAATCTTTGGGTAGTCAAATCTTGGAGCCTTTGCAGTCATTCTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTAGAGATTTCATCAGGGCAGACATTTGAGAGAAGTGCTATAGAAAAGTGGTTTGCTGAAGGAAACAAATTGTGCCCCTTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAAAGTTGAAACAATCCATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCCACATTGAAAGAAAAAATCCTGTCTGGAAATGATGAAGAAGTACTGCATGATCTGGAAACTCTTCAGACTTTGTGTGAAGAAAAAGACCAACACAGGGAATGGGTGATTCTGGAGAGTTACATACCAACTCTCATCCAAATTTTGTCAAGAAACCGTGATATAAGGAAATTATCTCTTGTCATCCTTGGCATGCTGGCAAAGGACAATGAAGATGCTAAGGAAAGAATTTCAGCCATTGACCATGCAATTGAATCGATTGTCCGGTCTCTTGGACGTCGTCCCGAGGAAAGGAAGTTAGCAGTGGCATTACTGCTCGAGTTATCCAAATATGATTTGGCACTAGAACACATTGGACAAGTTCAAGGTTGCATACTACTATTGGTGACCATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACAGATCTATTGGAGAATCTTTCGTACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTACTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATAACGTAAAGATGACTATGGCCACAAATTTAGCAGAAATGGAGTTAACTGACCACAATAGGGAGTCCTTATTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTCACATAATGATCTACAGGTGAAAACAGTTGCTATTAAAGCTCTTAGGAATTTATCCAGTTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGGGCTGCACGACCACTACTTAACCTCCTTTTCAATCAAAGCATACACACAGCAAGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCGGGATGCTCAAACACCTGTTTTATTGCTAGATTCTGATGATGATGTTTTTGATCTGTTCAATTTAGTTAGTGTCACGCATCTTGTTGTGCAAGTGCAACAGAACATTATCCAGACCTTTTATTCCTTATGTCAAACACCCTCATCTTCACTTATCAGATCCAAACTAATTGAGTGCTCAGCGGTTCCAAAATTGGTTCAACTGTGTGAGAATGAAAACCCAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAATTGTGATGAAGGCATCATACAGGAGCATGTCAATCAGAAATGCATTAATACTCTACTCCAGATCATAAAACCTCCATCTAAATCTGATGAAGAGGAAATACTTTCTGCCATGGGAATAATATGCTATCTTCCAGAAATTGACCAGATAACTCAATGGCTTCTGGATGCTGGTGCACTGTCAATAATTAAAAGTTATGTCCAAGATGGGAAAGACAGAGATCATCAAAAGAATAACTTATTAGAGAATGCCATTGGTGCCCTAAGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGGAACTGGGATCATAACTGTTTTAGTGCAGCTGCTTGAAAATGGAACAAACTTGACAAAACAACGTGTGGCACAGTCTCTTGCTCAATTTTCTAAAAGCTCATTTAAGCTGAGCCGGCCAATACCAAAGCGCAAAGGACTGTGGTGCTTCTCAGCTCCCGCTGATATTGACTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGCCTTTTGGAGGCTAATGCAGTTGGACCACTCACAAGGATTCTTGGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTGCAGAATGGTAGCAAAGTGCTTTCAGAAGCAAATGCCATACCACAAATTATAAGATACCTTGGTTCCCCCTCCCCTGGCTTGCAGGAGAAGTCCCTACATGCTTTGGAAAGGATTTTTCGGCTAGTTGAATACAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGGGTAATGGTAGTGTTAGGTCCATGTCAGCCAGAATATTGGCACATTTGAACGTGCTTCACGATCAATCTTCATATTTCTAA 3021 0.4045 MMVLDVLSGPTGTAISQTVETIADFLVTAKDVLVKKDSFKELAAYMERIKPVLEELRKGKVSDSETFNHAIEIMNKEIKDANQLRLDCSKKSKVYLLMNCRSIAKSLEDHTKQLSRALGLLPLATTGLSSGIVEEIEKLCEDMQTAGFKAALAEEEILEKIESGIREHNVDRSYANKLLILIADAVGIRNERLTIKKELEEFKSEIENARVRKDRAEAMQLDQIIALLERADAASSPKDKERKYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKILSGNDEEVLHDLETLQTLCEEKDQHREWVILESYIPTLIQILSRNRDIRKLSLVILGMLAKDNEDAKERISAIDHAIESIVRSLGRRPEERKLAVALLLELSKYDLALEHIGQVQGCILLLVTMSSGDDNQAARDATDLLENLSYSDQNVIQMAKANYFKHLLQRLSTGPDNVKMTMATNLAEMELTDHNRESLFDGGVLVPLLHMFSHNDLQVKTVAIKALRNLSSSKKNGQEMIRQGAARPLLNLLFNQSIHTASLWEDVAAIIMQLAASTISRDAQTPVLLLDSDDDVFDLFNLVSVTHLVVQVQQNIIQTFYSLCQTPSSSLIRSKLIECSAVPKLVQLCENENPNLRASAVKLFSCLVENCDEGIIQEHVNQKCINTLLQIIKPPSKSDEEEILSAMGIICYLPEIDQITQWLLDAGALSIIKSYVQDGKDRDHQKNNLLENAIGALSRFTVPTNLEWQKSAAGTGIITVLVQLLENGTNLTKQRVAQSLAQFSKSSFKLSRPIPKRKGLWCFSAPADIDCMVHGGICSVKSSFCLLEANAVGPLTRILGESDPGVCEASLDALLTLIEGERLQNGSKVLSEANAIPQIIRYLGSPSPGLQEKSLHALERIFRLVEYKQMYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0472 1006 Gene3D - 638 849 IPR011989 -
Gso7g0472 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Gso7g0472 1006 Gene3D - 873 1004 IPR011989 -
Gso7g0472 1006 Gene3D - 13 125 IPR036537 GO:0007166
Gso7g0472 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1006 - -
Gso7g0472 1006 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Gso7g0472 1006 Pfam U-box domain 262 327 IPR003613 GO:0004842|GO:0016567
Gso7g0472 1006 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Gso7g0472 1006 SUPERFAMILY RING/U-box 247 328 - -
Gso7g0472 1006 Pfam Armadillo-like 442 600 IPR006911 -
Gso7g0472 1006 Gene3D - 334 637 IPR011989 -
Gso7g0472 1006 SUPERFAMILY ARM repeat 332 996 IPR016024 -
Gso7g0472 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 333 IPR013083 -
Gso7g0472 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1006 - -
Gso7g0472 1006 SMART arm_5 874 914 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 706 747 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 918 958 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 568 611 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 444 485 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 362 401 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 405 443 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 527 567 IPR000225 GO:0005515
Gso7g0472 1006 SMART arm_5 664 704 IPR000225 GO:0005515
Gso7g0472 1006 CDD RING-Ubox_PUB 262 302 IPR045210 -
Gso7g0472 1006 Coils Coil 192 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0472 Gso-Chr7 4691010 4697981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0472 249 1006 U-box Gene Family AT1G76390 28.253 3.75e-61 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0472 - - gmx:100799969 1916.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0472 7 4691010 4697981 Gso7g0472 7 4691010 4697981 ECH
Gso7g0472 7 4691010 4697981 Gso16g0178 16 2053110 2060125 GST