Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0464 ATGGAATATACTTATTCAGCAGGTGTAGAGGCAGAAACTCACACAAGTAGCAGCACCACCCCATCAAGATCAAAGAAGAGAAACAACAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAGACCATGTTTGAATCAGAGTCAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTGGCCAGAGAGCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAAGAGGGCTAGGTGGAAGTCAAAGCAACTTGAGAGAGACTATGGCATACTCCAATCCAATTACAACAGTTTGGCTTCCCGTTTTGAAGCTCTTAAGAAGGAAAATCAAACATTACTAATTCAGCTGCAGAAGCTGAATCATCTAATGCAGAAGCCAATGGAGCCAGGTCAGAGATGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAAGCTGAGGGAAAGCCAAGCCCATCAATGGAAATATCAGAACATTTACTTGGTGTTCTGTCTGATGATGACACAAGCATAAAGGTGGAAGACTTTGGCCTAGAAGATGAACATGGCCTTCTGAATTTTGCTAAGCATGTTGATGGTTCCTTGACTTCACCAGAAGATTGGAATGCTTTTGAATCCAATGATCTATTAGGCCAATCAACCACTGATGATTACCAATGGTGGGACTTCTGGTCCTGA 717 0.4282 MEYTYSAGVEAETHTSSSTTPSRSKKRNNNTRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQKLNHLMQKPMEPGQRCTQVEAANSMDSESENGGTMKCEAEGKPSPSMEISEHLLGVLSDDDTSIKVEDFGLEDEHGLLNFAKHVDGSLTSPEDWNAFESNDLLGQSTTDDYQWWDFWS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0464 238 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Gso7g0464 238 CDD homeodomain 32 86 IPR001356 GO:0003677
Gso7g0464 238 MobiDBLite consensus disorder prediction 144 165 - -
Gso7g0464 238 SMART HOX_1 23 89 IPR001356 GO:0003677
Gso7g0464 238 MobiDBLite consensus disorder prediction 1 38 - -
Gso7g0464 238 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Gso7g0464 238 Gene3D - 12 94 - -
Gso7g0464 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 238 IPR045224 GO:0003700
Gso7g0464 238 SUPERFAMILY Homeodomain-like 14 87 IPR009057 -
Gso7g0464 238 Pfam Homeodomain 32 83 IPR001356 GO:0003677
Gso7g0464 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 10 238 - -
Gso7g0464 238 Pfam Homeobox associated leucine zipper 85 127 IPR003106 GO:0006355|GO:0043565
Gso7g0464 238 PRINTS Lambda-repressor HTH signature 56 65 IPR000047 GO:0003677
Gso7g0464 238 PRINTS Lambda-repressor HTH signature 65 81 IPR000047 GO:0003677
Gso7g0464 238 MobiDBLite consensus disorder prediction 9 25 - -
Gso7g0464 238 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0464 Gso-Chr7 4579759 4581066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0464 33 238 Homeobox Transcription Factor Family AT3G61890 53.555 7.14e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso7g0464 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0464 K09338 - gmx:100797862 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0464 7 4579759 4581066 Gso7g0464 7 4579759 4581066 ECH
Gso7g0464 7 4579759 4581066 Gso16g0170 16 1942016 1943567 GST