Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0448 ATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAA 858 0.4277 MVGDNINSRQYNIDINSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTLKSKGYGFVTFKDPEAAMKACQNPSPIIDGRRANCNIASIGANKNRTRAPQHQHGRSRAAPGVLASPAYHGTSSTFVHQNSGQYTFPNSSFGYTGYSQGTIYPLSCYGVFGGQQISTYYPSNGASGQVGLVHNIYPFSAQYSYNSHSHGFGVQYPQMMQFPILPRHYGSAGILALPSSMPMPNISAVTTTATTTTAEAIRTSVGTSQTAGTTSEQNSSAESLHRQTHDAL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0448 285 MobiDBLite consensus disorder prediction 256 285 - -
Gso7g0448 285 MobiDBLite consensus disorder prediction 256 279 - -
Gso7g0448 285 PANTHER BOULE-RELATED 5 266 IPR037366 GO:0003729
Gso7g0448 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 77 IPR000504 GO:0003723
Gso7g0448 285 Gene3D - 4 135 IPR012677 -
Gso7g0448 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 95 IPR000504 GO:0003723
Gso7g0448 285 SMART rrm1_1 19 91 IPR000504 GO:0003723
Gso7g0448 285 PANTHER - 5 266 - -
Gso7g0448 285 CDD RRM_RBM24_RBM38_like 18 93 - -
Gso7g0448 285 SUPERFAMILY RNA-binding domain, RBD 16 105 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0448 Gso-Chr7 4315146 4317347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0448 14 94 C2H2 Transcription Factor Family AT2G19380 41.975 6.76e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0448 - - gmx:100782484 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0448 7 4315146 4317347 Gso7g0448 7 4315146 4317347 ECH
Gso7g0448 7 4315146 4317347 Gso16g0154 16 1642836 1644884 GST