Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0444 ATGCCACCCTTCGTTGTTACACCCTCTTCTTCTTCTTCTTCCGTGCTCACCCCGAAACTGTGCAATCCTCAAGTGAAACGATTCGTTTTGCAGTTCGCGTATCCAAAGCGTTCGCGCACATTTCTAGAACCTTCTTCTTCTTCTTCTTTCTCTCCTATGAGGAAAACTAAGGAGGAGGTGGTTGAAGAACGGCTTTACAGAGAAGAATATGTCCACCCTCGAAACGATGACGTTTTGGAGGACGAAGAAGAACGAGACAAGAGGCTTGGAAAAGCGTGTGAAGTGTACGTGTGCAACCTGCCCCGAAGATGTGACGCAACATACTTGCTTGATATGTTCAGGCCCTATGGAACCATTCTATCTGTCGAGGTTTGCCGGGATGCTGAGACTAATGAAAGTAAGGGGTGTGGTTATGTGACACTGGGATCTATATATTCAGCAAGAAATGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGCGCGAATTGCGGGTTAGATTTTCAATTGAGATGAATTCTAAAAGGAGGAGTTTTAATAAAATGAACTCTTCCACCAAGAGAATTTCATACTATGAATCACCTCATAAGCTGTATGTTGGCAATCTTGCCAAGACTGTTAGACCTGAACAGTTGAGAGATCTCTTTAGCAGATTTGGAAATGTGGTTAGTGCAAGAGTGTTGCATGATTTTAAACAAGGGAACAGCCGAGTCTATGCCTTTCTCTCCTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATATTATGGACGTACACTAATCGTTAAAGAGGGTGTAGAGAGGAGTGAGGACTGA 834 0.44 MPPFVVTPSSSSSSVLTPKLCNPQVKRFVLQFAYPKRSRTFLEPSSSSSFSPMRKTKEEVVEERLYREEYVHPRNDDVLEDEEERDKRLGKACEVYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKGCGYVTLGSIYSARNAVAALDGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAMSLNGTEYYGRTLIVKEGVERSED* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0444 277 SMART rrm1_1 197 269 IPR000504 GO:0003723
Gso7g0444 277 SMART rrm1_1 94 167 IPR000504 GO:0003723
Gso7g0444 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 165 IPR000504 GO:0003723
Gso7g0444 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Gso7g0444 277 Gene3D - 43 177 IPR012677 -
Gso7g0444 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Gso7g0444 277 SUPERFAMILY RNA-binding domain, RBD 91 183 IPR035979 GO:0003676
Gso7g0444 277 CDD RRM_SF 198 269 - -
Gso7g0444 277 PANTHER OS02G0815200 PROTEIN 17 276 - -
Gso7g0444 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Gso7g0444 277 CDD RRM_SF 95 167 - -
Gso7g0444 277 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 17 276 - -
Gso7g0444 277 Gene3D - 178 276 IPR012677 -
Gso7g0444 277 SUPERFAMILY RNA-binding domain, RBD 193 274 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0444 Gso-Chr7 4274454 4277082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0444 93 277 Eukaryotic Initiation Factors Gene Family AT1G22760 30.366 1.81e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0444 - - gmx:100792560 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0444 7 4274454 4277082 Gso7g0444 7 4274454 4277082 ECH