Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0440 ATGGAAAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCTTTGGAAGTGAATTGTTTGGACCAAGTTCTGGTGGATGAAGAAAGCCTGAGACTAGAAGAGGAAGAGCAGTTTCTGATATCTAGCTTAGAGGACAACATGCCGTTCCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAGCCAAACTTTCAAACACTTCTGAGGCTGCAGCACATGAAGAAGCCATGGGAGGGAATAGCCTACATTCCAAGAATGGAAGCACAAGTGCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAGTCAGAAAGCAATGAACTCCAACACCCACTTTCAATTTCATGTTTTGAGAAAGTGAACTATGAGTGCAACCAGGAACCACAGAAAGTTTCACAAACATGCCCCAAATCTCAGCCAGCAGCAACAAGGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTCCTTAGATCCCTCATGCCACCTTCATATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGAGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGTGGTGGTGGTTCTTCTTCTTCTTCCACCATGTTGTGTAAGCCCCCACCACCATCGTCATTATCATCACCACATGGCTATGGAATGAGGTCATCAACTAGTGATGAAGTGAACTGTGGGGATGAAGTGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAAGTGACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAGGCCAGGACAATTGTTAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTATGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCAAATATTCAGCTTCATTAATGGTAGCTAG 1158 0.4516 MERLQGPLNSCFFGDPLEVNCLDQVLVDEESLRLEEEEQFLISSLEDNMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHMKKPWEGIAYIPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSISCFEKVNYECNQEPQKVSQTCPKSQPAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGGSSSSSTMLCKPPPPSSLSSPHGYGMRSSTSDEVNCGDEVKAENKSEAADIKVTLIQTHVNLKIECQRRPGQLLKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEDCKLCSASDIAEAVHQIFSFINGS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0440 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 247 IPR036638 GO:0046983
Gso7g0440 385 MobiDBLite consensus disorder prediction 145 181 - -
Gso7g0440 385 Coils Coil 228 248 - -
Gso7g0440 385 PANTHER MAX DIMERIZATION, MAD 19 384 - -
Gso7g0440 385 MobiDBLite consensus disorder prediction 243 287 - -
Gso7g0440 385 SMART finulus 186 237 IPR011598 GO:0046983
Gso7g0440 385 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Gso7g0440 385 CDD bHLH_AtFAMA_like 183 249 - -
Gso7g0440 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Gso7g0440 385 MobiDBLite consensus disorder prediction 250 265 - -
Gso7g0440 385 Gene3D - 171 251 IPR036638 GO:0046983
Gso7g0440 385 PANTHER TRANSCRIPTION FACTOR BHLH70 19 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0440 Gso-Chr7 4242962 4246355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0440 43 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.286 3.86e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g0440 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0440 - - gmx:100789928 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0440 7 4242962 4246355 Gso7g0440 7 4242962 4246355 ECH
Gso7g0440 7 4242962 4246355 Gso16g0145 16 1572482 1575540 GST