LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g0430	ATGGATGATGATATTGTAGGACTCGGTTTTCGTCCAACAGAAGAAGAACTTGTGGACTTTTACCTCAAACACATGTTGCTCGGCAATGATCCCCGTGCCCACGTCATCCCTGTCATTGATCTTTGCGATGTGGAACCTTGGGATGTACCAGTGATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTATGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCAGACTCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAGAAGGGTATACTTAGAAAGCAGTGATACAGATGCTGAAGTCATCTCTAAACTGGATGACAATATTGTAGATATTTCAACAGCATTTACTGAATATCCTAATTCAGATGAATACTATTCATCAAAAAGGTTTAAATCATCACATGATACTGTTTATGGTGACATATGTTTTCCATCTTCTAACCTTGAAGCAAACCAAGAGAAAAACGAGAGTATGTTTCAAGATAATTTCTGGGGAGCGGAGACATCATCTTGTGACTCGACAATAGATAAACCTTTGGAGATCAATTATATTGATATTTCTAGTTCTCCTTTCACTCCATGGAGTTGGGAAAATTAA	1212	0.3993	MDDDIVGLGFRPTEEELVDFYLKHMLLGNDPRAHVIPVIDLCDVEPWDVPVMLAKSSSAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKATGKDRDIRTGDTNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHESQRTFVLCCLIKKPGKATEGGTDALICDEGEPSRSMVSDYENQATAEGIPSEGTFTGMETIFQATPWAENCFSPIQQSPTSIEQEGASFPNYAFNNAYFRNEDNVMQTPFETTKEDEFLNSILAGESIVINEENKHNFVHSSTQSESLRRVYLESSDTDAEVISKLDDNIVDISTAFTEYPNSDEYYSSKRFKSSHDTVYGDICFPSSNLEANQEKNESMFQDNFWGAETSSCDSTIDKPLEINYIDISSSPFTPWSWEN*	404

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso7g0430	403	Gene3D	NAC domain	13	161	IPR036093	GO:0003677\|GO:0006355
Gso7g0430	403	PANTHER	NAC DOMAIN CONTAINING PROTEIN 49	6	326	-	-
Gso7g0430	403	SUPERFAMILY	NAC domain	6	156	IPR036093	GO:0003677\|GO:0006355
Gso7g0430	403	ProSiteProfiles	NAC domain profile.	4	156	IPR003441	GO:0003677\|GO:0006355
Gso7g0430	403	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	6	326	-	-
Gso7g0430	403	Pfam	No apical meristem (NAM) protein	7	137	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g0430	Gso-Chr7	4115529	4118702	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso7g0430	1	156	NAC Transcription Factor Family	AT3G49530	45.963	2.62e-41	149

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Gso7g0430		NAM	9.1e-28	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g0430	-		-	gmx:100780890	743.421

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0430	7	4115529	4118702	Gso16g0138	16	1457300	1460577	GST

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