Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0418 ATGACGATGATGAGCAACAACAACAACAACAACAACGTTGGAGAATTTGGAGACACCACTCTGACTAAGGTTTTTGTTGGGGGCTTAGCTTGGGAGACTCCGAAGGATGCCCTCAAAGACCACTTTGAGAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCCGATAAGCACACTGCCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAGGAGGCTGAGGCTGCCAAGAAGGCTTGTGAGGATTCAGCAACTCTCGTTATCAATGGCCGTCGAGCAAATTGCAATCTTGCTTGCCTAGGTGCTCGTCGCCCAAGGTCTTCTTCCAATGTTTCACCACCTCCACAACCACAAGGAGGATCAAACGGTGGAGTAGTGAAGAACAATGCATCAAGCCCACCAGTCATCAATCACGTGCAGCCATATTATTATCCAGTGAGGACAACTGCTGCTCTGCCATTCCATAATCACACTCTTCCTTTCTATGGGTATGCGCCTACCTACATTGTGACGGACGTAAACTACAATTACAATCAGAAACTGTGCTACGGTAGCGGTGGGACCTACATGAATGGGCAGCATGTGTACCCGAGGCAGGCTATTGTGGGTGCCAACACACTGATGCCAATGTACCCTCTTTATCAGTATCATCATCCAACGGAGACCATAGGTGTACCAGCTCCAAACTTTTATCCAACGGCATCATGGGCCCCAATGACCATCATGTCCAAGCCATCGTCTATCGTTCCTCATACAGGTACAGTTGGCACAGGTGAGTGCTTTAAAAGGGTTGTCTGA 798 0.4787 MTMMSNNNNNNNVGEFGDTTLTKVFVGGLAWETPKDALKDHFEKYGEILEAVIISDKHTAKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLACLGARRPRSSSNVSPPPQPQGGSNGGVVKNNASSPPVINHVQPYYYPVRTTAALPFHNHTLPFYGYAPTYIVTDVNYNYNQKLCYGSGGTYMNGQHVYPRQAIVGANTLMPMYPLYQYHHPTETIGVPAPNFYPTASWAPMTIMSKPSSIVPHTGTVGTGECFKRVV* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0418 265 SMART rrm1_1 23 96 IPR000504 GO:0003723
Gso7g0418 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Gso7g0418 265 CDD RRM_RBM24_RBM38_like 22 98 - -
Gso7g0418 265 PANTHER GEO13361P1-RELATED 1 252 - -
Gso7g0418 265 MobiDBLite consensus disorder prediction 104 130 - -
Gso7g0418 265 Gene3D - 3 112 IPR012677 -
Gso7g0418 265 SUPERFAMILY RNA-binding domain, RBD 18 122 IPR035979 GO:0003676
Gso7g0418 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
Gso7g0418 265 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0418 Gso-Chr7 3927651 3930898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0418 18 168 C2H2 Transcription Factor Family AT2G19380 30.189 2.70e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0418 - - gmx:100780861 492.656