Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0412 ATGAGTGCAAGTGACAACGCATGGGGTGAATCTGACACAATTGAGATCACAGGAAAGATCATGGTGGTGGCCATAATATTCCTCTTCATGGTGGTTGTCTTTGTTCTTGTGCTCCATCTCTATGCAAAATGGTTCTGGTGGAGCATGGAGGAAAACGCCACTCCCCAGCCCCGCCACCGCCGCCGCCGCCGCCGGAGGTTTGTCTTCGCCCCCGGTCAAGACTCGGTGATCTATGAGACTCACCAGGTTGGGCTTGACCCTTCAGTTCTCAAGTCCTTGCCAGTGTTGGTTTTCCAACCTGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGCCTCTCTGAGATTGTCCAAGGTGAAAAGTTGAGGCTTTTGCCCAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCACACTCCACTTGTCCTCTTTGTAGGAACCCTGTTGCTTTTGAATCCTCTAAATGTGAAGAGAGTAATGTCTCAGGGAATAGTGATTCATCATCATCATCATATGAAGAGAACTCAGGTGGTGTGAGTGGTTTGGAACCTTCAAATTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAAGTTAGTTCCATTGGGGTTTCATTGGAAGAAAAAGAAGAAGAAGAAGAAGAAGGTACTTCTCAGTCCCAGCAACCACCTTGTTCTACACCACCTACAGCATCTTCTTCTGCTAGTAGCAATGTTAATGGAAGGTGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTTTGTCACCTTCTGGGAGTAGGTGTGCTGAAGAGGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTCAAGAGGCTTTTGAGCAGGGACAAAAAGTTGAGTCCTTGCAGTCCAAGTTCTGTAGACGTGGAACAAGCACAGAGCTAG 945 0.4709 MSASDNAWGESDTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEENATPQPRHRRRRRRRFVFAPGQDSVIYETHQVGLDPSVLKSLPVLVFQPEDFKEGLECAVCLSEIVQGEKLRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFESSKCEESNVSGNSDSSSSSYEENSGGVSGLEPSNFPTNVLVWGNQTQVSSIGVSLEEKEEEEEEGTSQSQQPPCSTPPTASSSASSNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEEEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAQS* 315
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0412 314 Pfam Ring finger domain 108 151 IPR001841 -
Gso7g0412 314 SUPERFAMILY RING/U-box 89 157 - -
Gso7g0412 314 PANTHER RING-H2 FINGER PROTEIN ATL3 3 311 - -
Gso7g0412 314 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gso7g0412 314 MobiDBLite consensus disorder prediction 260 281 - -
Gso7g0412 314 MobiDBLite consensus disorder prediction 208 245 - -
Gso7g0412 314 MobiDBLite consensus disorder prediction 224 245 - -
Gso7g0412 314 CDD RING-H2_EL5_like 108 151 - -
Gso7g0412 314 MobiDBLite consensus disorder prediction 162 186 - -
Gso7g0412 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 311 IPR044675 -
Gso7g0412 314 SMART ring_2 109 150 IPR001841 -
Gso7g0412 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso7g0412 Gso-Chr7 3883350 3885066 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0412 15 297 C3H Transcription Factor Family AT1G53820 42.345 3.36e-63 201
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0412 - - gmx:100775523 516.538
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0412 7 3883350 3885066 Gso7g0412 7 3883350 3885066 ECH
Gso7g0412 7 3883350 3885066 Gso16g0118 16 1281471 1283077 GST