Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0408 ATGACCAACCCAAAACTAGGCTATGCCGGAATCTCCGATTCCGGCAACCACATTCCCTCCTCCAAGAAAAACCACAAGAAGCTCCTCCTCTCCCTCTTGGCCACCCTCCTCGTGGCGGCTTCGCTGGTGGCCATTGTTGTCGGAGTAAAAAATAAAAACTCCGACAACTCTGCCACCAGCACCCCCCTCTCCCTCTCCCACCACTCACACACGATCGTGAAGAGCGCGTGCAGCTCCACATTCTACCCCGAACTCTGCTACTCCGCCATCGCCTCTGAGCCCAATGTCACTCACAAAATCACCACCAACCGCGACGTCATCCAGCTCTCCTTAAAAATCACCTTCCGCGCGGTGGAGCAAAACTACTTCACCGTGAAAAAACTCTTTACCGAACACGACGACCTAACAAAACGCGAAAAAACCGCTCTCCACGACTGCCTGGAAACCATAGACGAAACCCTCGACGAGCTCAGAGAAGCACAACACAACCTCGAGCTTTACCCTAACAAGAAAACGCTCTACCAGCACGCCGACGATCTCAAAACCCTCATCAGCGCCGCCATAACGAACCAGGTCACGTGCCTCGACGGTTTCTCTCACGATGATGCTGACAAGCACGTGAGGAAGGCACTGGAGAAGGGACAGGTGCACGTGGAACACATGTGCAGCAACGCATTGGCCATGACGAAGAACATGACCGACAGTGACATAGCTAACTACGAATACAATATGAGAGTTGAAAATAATGGACAAAATGGTAATAGCAATAGGAAGTTGTTGGTGGAGAATGATGTTGAGTGGCCGGAGTGGATTTCGGCGGCGGATAGGAGGCTACTTCAGGCGTCGACGGTGAAGGCTGACGTGACGGTGGCGGCGGACGGGAGCGGGGACTTCAAGACGGTGACGGAGGCGGTGGACGCGGCTCCGTTGAAGAGTAGTAAGAGGTTTGTTATAAGGATAAAGGCTGGGGTCTATAGAGAGAACGTTGAGGTGCCTAAGAAGAAGAACAATATCATGTTCTTGGGTGATGGGAGGACCAACACTATCATCACTGCTAGCAGAAATGTTGTTGATGGTAGCACCACCTTCCACTCTGCCACCGTCGCTGTGGTGGGTTCAAATTTCTTGGCCCGGGACTTAACATTCCAAAACACAGCGGGCCCATCAAAGCACCAAGCTGTGGCCCTAAGGGTTGGTGGGGACCTCTCAGCATTCTTCAATTGTGACATCCTAGCATTCCAAGACACCCTTTATGTCCACAACAATCGCCAATTCTTTGTGAAGTGCCTAATTGCTGGCACAGTGGATTTCATCTTTGGCAACTCTGCAGTGGTGTTCCAAGACTGTGACATCCACGCCAGGCTTCCTAGCTCGGGCCAGAAGAACATGGTCACGGCCCAAGGAAGAGTTGACCCTAACCAAAACACTGGCATTGTGATCCAGAAGTGTAGGATTGGTGCCACTAATGACTTGGAGTCTGTGAAGAAGAATTTCAAGACATATCTAGGGAGGCCTTGGAAGGAGTACTCTAGGACTGTGATCATGCAAAGTAGTATAAGTGATGTGATTGACCCAATTGGGTGGCATGAGTGGAGTGGGAATTTTGGATTGAGCACTTTGGTTTATAGGGAGTATCAGAACACTGGGCCTGGTGCTGGTACTTCTAATAGGGTCACTTGGAAAGGGTATAAGGTCATCACTGATACTGCTGAGGCCAGGGAATATACCCCTGGAAGCTTCATTGGGGGCTCTAGCTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGTTGTAA 1797 0.5097 MTNPKLGYAGISDSGNHIPSSKKNHKKLLLSLLATLLVAASLVAIVVGVKNKNSDNSATSTPLSLSHHSHTIVKSACSSTFYPELCYSAIASEPNVTHKITTNRDVIQLSLKITFRAVEQNYFTVKKLFTEHDDLTKREKTALHDCLETIDETLDELREAQHNLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHDDADKHVRKALEKGQVHVEHMCSNALAMTKNMTDSDIANYEYNMRVENNGQNGNSNRKLLVENDVEWPEWISAADRRLLQASTVKADVTVAADGSGDFKTVTEAVDAAPLKSSKRFVIRIKAGVYRENVEVPKKKNNIMFLGDGRTNTIITASRNVVDGSTTFHSATVAVVGSNFLARDLTFQNTAGPSKHQAVALRVGGDLSAFFNCDILAFQDTLYVHNNRQFFVKCLIAGTVDFIFGNSAVVFQDCDIHARLPSSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATNDLESVKKNFKTYLGRPWKEYSRTVIMQSSISDVIDPIGWHEWSGNFGLSTLVYREYQNTGPGAGTSNRVTWKGYKVITDTAEAREYTPGSFIGGSSWLGSTGFPFSLGL* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0408 598 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 233 IPR035513 -
Gso7g0408 598 Pfam Pectinesterase 287 583 IPR000070 GO:0030599|GO:0042545
Gso7g0408 598 Pfam Plant invertase/pectin methylesterase inhibitor 72 228 IPR006501 GO:0004857
Gso7g0408 598 CDD PMEI-like_3 75 233 - -
Gso7g0408 598 PANTHER PECTINESTERASE 23 597 - -
Gso7g0408 598 Coils Coil 143 163 - -
Gso7g0408 598 Gene3D - 280 598 IPR012334 -
Gso7g0408 598 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 233 IPR035513 -
Gso7g0408 598 SMART PMEI_2 68 228 IPR006501 GO:0004857
Gso7g0408 598 ProSitePatterns Pectinesterase signature 1. 312 331 IPR018040 -
Gso7g0408 598 PANTHER PECTINESTERASE 23 597 - -
Gso7g0408 598 ProSitePatterns Pectinesterase signature 2. 431 440 IPR033131 -
Gso7g0408 598 SUPERFAMILY Pectin lyase-like 282 597 IPR011050 -
Gso7g0408 598 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0408 Gso-Chr7 3838937 3844213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0408 22 598 Carbohydrate Esterase AT3G14310 69.309 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0408 K01051 - gmx:100777646 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0408 7 3838937 3844213 Gso7g0408 7 3838937 3844213 ECH
Gso7g0408 7 3838937 3844213 Gso16g0114 16 1229329 1235282 GST