Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0399 ATGGCTTCTTTTGGAGCAAATACTGCAACAAAACCAATCAAAAAGAGGAAAAGAACGATTGAGATCAAGAAAGTTGAGCAGATAAACAGGCGTTACGTGACCTTCTCTAAACGCAAATTAGGGTTATTCAATAAACTCACCGAGCTCTCAGTTCTGTGTCAAGTGGAAGCCGCTGTGATCATCACCTCCCAAAACGGGAAGCTCTATACGTGTGGCTACCCCGACGCCGATGCCGTCGTTCGCCGCTACCTCAGCGGAGGGCTATCCCGAGGGCTGGACAGTGAAAGCAAAAAGAGACAGCAAGATGCAATTGAAACCCTAAGGCCTGAATACGAGGCCACTCAGAACCACTTGAAAGAAGAGCAAAAGCGTTTGCAAGAAATCAAAGAGACGCGAAAGAGTAGTTTGTGCTTTCCCTCGTGGTGGAATCTCCCCACCGAGGGTATGGGTTTGGAGGATCTTGAACAGTTCAAGACTTCTTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGATGAATTCGGTCCCATCAATGCCAAATGCTCTTATGGTACCACCAATGCCATCTACTGTGCTTCCACCAGTGTCACATGCTGCTATGGTTCCACCAATGATGCCGCCACAGTTTCAAAACATGCCACTCTTGAGTGTTCAACGTTTAAGTGGAAATCAAGTTCAAGATGATTATTGGAGGAGTGCTGCTATAGCTAGTAATGGTTTTGGAAGCCTGAAAAGTTATGGATATGCTACTTAA 768 0.4609 MASFGANTATKPIKKRKRTIEIKKVEQINRRYVTFSKRKLGLFNKLTELSVLCQVEAAVIITSQNGKLYTCGYPDADAVVRRYLSGGLSRGLDSESKKRQQDAIETLRPEYEATQNHLKEEQKRLQEIKETRKSSLCFPSWWNLPTEGMGLEDLEQFKTSLERLKFNLVGALQEKQMNSVPSMPNALMVPPMPSTVLPPVSHAAMVPPMMPPQFQNMPLLSVQRLSGNQVQDDYWRSAAIASNGFGSLKSYGYAT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0399 255 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 186 - -
Gso7g0399 255 PANTHER MADS BOX PROTEIN 8 186 - -
Gso7g0399 255 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Gso7g0399 255 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Gso7g0399 255 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Gso7g0399 255 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Gso7g0399 255 Coils Coil 111 131 - -
Gso7g0399 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Gso7g0399 255 Gene3D - 28 114 IPR036879 GO:0003677|GO:0046983
Gso7g0399 255 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Gso7g0399 255 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0399 Gso-Chr7 3770622 3771389 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0399 8 169 Type I MADS-box Gene Family AT3G04100 35.057 2.44e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso7g0399 SRF-TF 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0399 - - gmx:100818284 466.077