Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0397 ATGGCTTCTTCTGGAGCAAATACTGCAACAAAGCCAATCAAAAAAAGGAAAAGAACGATTGAGATCAAGAAAGTTGAGCAGATAAACAGGCGTCACGTGACCTTCTCCAAACGCAAATTAGGGTTATTCAATAAACTCACAGAGCTCTCAATTCTGTGCCAAGTGGAAGCCGCTGTGATCATCACCTCCCAAAACGGGAAGCTCTATACGTGTGGCTACCCCGACGCCGATGCCGTCGTTCGCCGCTACCTCAACGGAGGGCTACCCCGGCGGCTGGACAGTGCATGCAAAAAGAGACAGCAAGATGCAATTGAAACCCTAAGGCTTGAATACGAGGCCACTCAGAACCACTTGAAAGAAGAGCAAAAGCGTTTGCAAGAAATCAAAGAGACGCGAAAGAGTAGTTTGCGCTTTCCCTCGTGGTGGAATCTCCCCACCGAGGGTATGGGTTTGGAGGATCTTGAACAGTTCAAGACTTCTTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGATGAATTCGGTCCCATCAATGCCACATGCTGCTATGCTTCCACCAATGTCATCTACTATGGTTCCACCAATGCCATCTACTGTGGTTCCACCAGTGCCACATGCTGCTATGGTTCCGCCAATGTCATCTACTATGGTTCCACCAATGCCACATGCTGCTATGGTTCCACCAATGATGCCGCCACAGTTTCAAAGCATGCCGCTCTTGAGTGCTCAACGTTTAAGTGGAAATCAAGTTCAAGATGATTATTGGAGGAGTGCTGCTATAGCTAGTACTAGTTCGACGTTTGCTTCAAATGGTTTTGGAAGTCTGAAAAGTTATGGGTATACTACTTAA 864 0.4711 MASSGANTATKPIKKRKRTIEIKKVEQINRRHVTFSKRKLGLFNKLTELSILCQVEAAVIITSQNGKLYTCGYPDADAVVRRYLNGGLPRRLDSACKKRQQDAIETLRLEYEATQNHLKEEQKRLQEIKETRKSSLRFPSWWNLPTEGMGLEDLEQFKTSLERLKFNLVGALQEKQMNSVPSMPHAAMLPPMSSTMVPPMPSTVVPPVPHAAMVPPMSSTMVPPMPHAAMVPPMMPPQFQSMPLLSAQRLSGNQVQDDYWRSAAIASTSSTFASNGFGSLKSYGYTT* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0397 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Gso7g0397 287 PANTHER MADS BOX PROTEIN 9 186 - -
Gso7g0397 287 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Gso7g0397 287 Gene3D - 28 111 IPR036879 GO:0003677|GO:0046983
Gso7g0397 287 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Gso7g0397 287 Coils Coil 97 131 - -
Gso7g0397 287 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Gso7g0397 287 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Gso7g0397 287 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Gso7g0397 287 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Gso7g0397 287 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0397 Gso-Chr7 3754007 3754870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0397 15 165 Type I MADS-box Gene Family AT5G60440 32.903 4.66e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso7g0397 SRF-TF 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0397 - - gmx:100817750 479.944