Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0396 ATGCTTCCAAAGTTCATCATTAGCCCCTTCAGGGTGGAATCCCAAGAAGGGAAGCATGTGAACAAGAGAAGAAAGCATGTGATATCATTTGAGAGTACCAACATGGATGTTGGTTTGAGACTTCTCCCTCAAATTACAAGCTCAAATAGCACATCAAATGTCCTCTTGAAATCTGCAGTGAGAAAGGCAAACCAACAATCCATCCCTCAAGACTTTTGCTTCCTTAAAACTTGCAATCTATGCAATAAGCAACTCAGTCCAGACAAAGATATTTACATGTACAGAGCAAAGACTGTCAATGCAGCAACAACGCAAAACAAAAAGAGGGGAAAGATTGAGATCAAAGAAGTTGAGCAGAGAAACCGGCGTTACGTGACTTTCTCCAAACGCAAACTAGGGTTATTCAACAAACTCACCGAGCTCTCTGTTCTCTGCCAAGTAGAGACCGCTGTGATCATCACCTCCCAAAACGGGAAGCTCTATTCCTGCGGCTACCCCGACCCCGACGCCGTCGTTCGGCGCTACCTCACCGGAGGGCCTCCGCTGCGGCGCAACCGTGCAAACAAGAGGGAGCAGCAAGAGTTCGTTGAGCAGCAAAGGCTGGAATACGAGGCTGTTCAGAATCAGTTGAAAGAAGAGAAAAAGCGTCTGCAAGAAATCAAAGGGACGCAAAATAATAATGGTTTCTGCTTTGCGGCCCCTTGGTGGAATCTCCCCACCGAGGGTATGGGTTTGGAAGATCTTGAACAGTTCAAGACTTCTTTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGATGAATTCGGTCCCATCAATGCCACATGCTGCTATGCTTCCACCAATGCCATCTACTGTGGTTCCACCAGTGCCACATGCTGCTATGGTTCCACCAATGTCATCTACTATGGTTCCACCAGTGCCACATGCTGCTATGGTTCCACCAATGATGCCACCACAGTTTCAAAACATGTCGCTCTTGAGGGCTCAACGTTTAAGTGGAAATCAAGTTCAAGATGATTATTGGAGGAGTGCTGCTATAGCTAGTACTGCTTCGACGTTTGCTTCAAATGTTTTTGGAAGCCTGAAAAATTATGGGTATACTACTTAA 1122 0.4617 MLPKFIISPFRVESQEGKHVNKRRKHVISFESTNMDVGLRLLPQITSSNSTSNVLLKSAVRKANQQSIPQDFCFLKTCNLCNKQLSPDKDIYMYRAKTVNAATTQNKKRGKIEIKEVEQRNRRYVTFSKRKLGLFNKLTELSVLCQVETAVIITSQNGKLYSCGYPDPDAVVRRYLTGGPPLRRNRANKREQQEFVEQQRLEYEAVQNQLKEEKKRLQEIKGTQNNNGFCFAAPWWNLPTEGMGLEDLEQFKTSLERLKFNLVGALQEKQMNSVPSMPHAAMLPPMPSTVVPPVPHAAMVPPMSSTMVPPVPHAAMVPPMMPPQFQNMSLLRAQRLSGNQVQDDYWRSAAIASTASTFASNVFGSLKNYGYTT* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0396 373 SUPERFAMILY SRF-like 108 177 IPR036879 GO:0003677|GO:0046983
Gso7g0396 373 PRINTS MADS domain signature 109 129 IPR002100 GO:0003677|GO:0046983
Gso7g0396 373 PRINTS MADS domain signature 129 144 IPR002100 GO:0003677|GO:0046983
Gso7g0396 373 PRINTS MADS domain signature 144 165 IPR002100 GO:0003677|GO:0046983
Gso7g0396 373 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 102 280 - -
Gso7g0396 373 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 117 162 IPR002100 GO:0003677|GO:0046983
Gso7g0396 373 Pfam zinc-finger of the FCS-type, C2-C2 71 96 IPR007650 -
Gso7g0396 373 Gene3D - 119 219 IPR036879 GO:0003677|GO:0046983
Gso7g0396 373 Coils Coil 193 227 - -
Gso7g0396 373 ProSiteProfiles Zinc finger FLZ-type profile. 73 119 IPR007650 -
Gso7g0396 373 PANTHER MADS BOX PROTEIN 102 280 - -
Gso7g0396 373 SMART madsneu2 107 166 IPR002100 GO:0003677|GO:0046983
Gso7g0396 373 ProSiteProfiles MADS-box domain profile. 107 167 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0396 Gso-Chr7 3742021 3747153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0396 105 259 Type I MADS-box Gene Family AT5G60440 35.220 6.42e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso7g0396 SRF-TF 9.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0396 - - gsj:114418701 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0396 7 3742021 3747153 Gso16g0104 16 1136914 1138007 GST