Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0394 ATGGAGGGAACTTCATCGGCACCAACGACTTTGCCCTCTACTCCTGAAGATAATCGTCTCTTGGTTGACGATTTCTTCTTTTCAGCCCTTTATGATGCTGAAGAAGTATTTCCAATTTCAGATGAGAAATATGCAGAAGAGCTACAACTACAAGAAGTCCTATATTCCTCTACAGTGTCAAGTACTGGAGTTACAAAGGAAGTTATTCAAATTGATGTAGATGTTGACTGTGATACCCCTTTGAGAATCCTCAAGGGCAAACAGAAAGAGACCGGTGAATCTTCCCAACAAGTCTATTGTGGTATTTGTATGGATGCCAAATATGGTGAAGAAATGTTCAGAAACCAAAACTGCTCCCACTCATTTTGTGATGATTGCATTGGGAGATATGTGGCTACAAAGGTTCAGGAGAATATATCAATGGTGAAATGCCCTCACCCCAAATGCAAAGGGGTTATAGAGCCTCAGTACTGTCGCTCATTTATCCCTAAGGAAGTCTTTGATCGATGGGAAGATGCCCTATGTGAGAATTTGGTGCCTGGATCACAAAAATTTTATTGCCCTTTTAAGGATTGTTCTGCTATGTTGATAAATGATGCAGAGGAAATTGTGACTGTTTCGGAGTGTCCACACTGCAACAGATTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAGTCGAATGTAAGGAGTTTCAGAATTTGAAGGAGTACGAGCGAGAGAGGGAAGATTTGATGGTGATGGAACTTGCTAAGAATAAAAATTGGAAAAGATGTCCAAAATGCAGCTTTTATGTGGAAAGAATCGATGGATATGTGGCAATGAATTTTGCTATGCCTGTGGATCCTCTTGGAGTGGTGGTCTGCACTATGAATGTAGACCTCGTTAAGAATTGCTGGAAGCAAGTGTGCAATGTTATTGTTTTTGAATGA 936 0.4092 MEGTSSAPTTLPSTPEDNRLLVDDFFFSALYDAEEVFPISDEKYAEELQLQEVLYSSTVSSTGVTKEVIQIDVDVDCDTPLRILKGKQKETGESSQQVYCGICMDAKYGEEMFRNQNCSHSFCDDCIGRYVATKVQENISMVKCPHPKCKGVIEPQYCRSFIPKEVFDRWEDALCENLVPGSQKFYCPFKDCSAMLINDAEEIVTVSECPHCNRLFCAQCKVSWHAGVECKEFQNLKEYEREREDLMVMELAKNKNWKRCPKCSFYVERIDGYVAMNFAMPVDPLGVVVCTMNVDLVKNCWKQVCNVIVFE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0394 311 Gene3D - 227 305 - -
Gso7g0394 311 SUPERFAMILY RING/U-box 241 276 - -
Gso7g0394 311 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 279 - -
Gso7g0394 311 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 279 IPR031127 GO:0004842|GO:0016567
Gso7g0394 311 ProSiteProfiles TRIAD supradomain profile. 96 311 IPR044066 -
Gso7g0394 311 SUPERFAMILY RING/U-box 95 180 - -
Gso7g0394 311 Pfam IBR domain, a half RING-finger domain 170 230 IPR002867 -
Gso7g0394 311 SUPERFAMILY RING/U-box 177 235 - -
Gso7g0394 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 182 IPR013083 -
Gso7g0394 311 ProSiteProfiles Zinc finger RING-type profile. 100 148 IPR001841 -
Gso7g0394 311 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Gso7g0394 311 SMART ibrneu5 168 230 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0394 Gso-Chr7 3736046 3737191 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0394 100 272 C3H Transcription Factor Family AT2G19610 26.087 1.10e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0394 K11975 - gmx:100816161 639.032