Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0393 ATGGAGAAGATGGAGGGTGGTTTTCCTCGACTTGCCTCATTCGTGTGCAACTGTGAGCCTTTCTCAGAGGAAGAACTCCAAGCCATCGAAGCCTCTCTTTCCAACCCTAACAACAAACGTCCATATCCATTCAATGCGCGCGCTTCTTCTTTCTCGCCTCATACAGAAGATATAATAAGGTTGGTCCATTGGCTAAGGAAGAAGAGGTTCGTGATTTTCATGAACCAAAACTGTTGTCACTATTTTTGTGATGATTGCATTGGAAGACATCTGGCTGCAAAAATTCAGGAGAATATATTAATGGATTGCTCGGCTATGTTGATACCTGATGTTGAGGAAGTTGTGACTGTTTCGAAATGTCCACATTATCTAATGCTTATGGAACTTGCTAAGAACAAATGTTGGAGAAGATGTCCAAAATGCAATTTCTACGTGGAAAAGGTTGATGGATGTAAACATATTACTTGCAGATGTGGCAATGAATTTTGCTATGCCTGTGGATCCTCTTGGAATGGTGGTCAGCATATAAAGTTGCACGAGCACTTGTGCAATGCTATATGGTATATGTTGTTAGTGAACCACACATTGTAG 591 0.4112 MEKMEGGFPRLASFVCNCEPFSEEELQAIEASLSNPNNKRPYPFNARASSFSPHTEDIIRLVHWLRKKRFVIFMNQNCCHYFCDDCIGRHLAAKIQENILMDCSAMLIPDVEEVVTVSKCPHYLMLMELAKNKCWRRCPKCNFYVEKVDGCKHITCRCGNEFCYACGSSWNGGQHIKLHEHLCNAIWYMLLVNHTL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0393 196 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 120 181 - -
Gso7g0393 196 SMART ibrneu5 118 183 IPR002867 -
Gso7g0393 196 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 120 181 IPR031127 GO:0004842|GO:0016567
Gso7g0393 196 ProSiteProfiles TRIAD supradomain profile. 1 190 IPR044066 -
Gso7g0393 196 SUPERFAMILY RING/U-box 122 175 - -
Gso7g0393 196 Gene3D - 116 188 - -
Gso7g0393 196 Pfam IBR domain, a half RING-finger domain 128 173 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0393 Gso-Chr7 3732709 3734020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0393 138 175 ARIADNE family AT3G27720 50.000 4.66e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0393 K11975 - gmx:100815626 144.436