Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0380 ATGGCTAATGAAGGAAAGAAAAGCAATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGGAATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTGAAGACATGTTTCAAGCGGATATTGGATTGGATGGAGGCCCTTCTCTTGCTTCTTCTGATTCCTCAACTTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCCAGTTACCAGAATTTCTGTTTTGGGGTGAACCAACTCCAAGATATAAAGAAGGGAAAGGGGGGAATTCTAGGAGGAGGAGGTAGAAGTAGACACAGAAGTGGCAGAAAGCAAAAAATGTTCTATGGCCATGATGTTTGA 675 0.4163 MANEGKKSNNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATGNLELVEEAKKKFQEIREAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSHTKSNENGEESFEELQQLFEDMFQADIGLDGGPSLASSDSSTSSAYMTYSESSSSNKRNSSEMNFGKAENSSVFDASYQNFCFGVNQLQDIKKGKGGILGGGGRSRHRSGRKQKMFYGHDV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0380 224 PANTHER PUTATIVE, EXPRESSED-RELATED 1 224 - -
Gso7g0380 224 SMART dnaj_3 9 73 IPR001623 -
Gso7g0380 224 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Gso7g0380 224 MobiDBLite consensus disorder prediction 133 167 - -
Gso7g0380 224 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Gso7g0380 224 Pfam DnaJ domain 10 78 IPR001623 -
Gso7g0380 224 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 224 - -
Gso7g0380 224 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gso7g0380 224 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gso7g0380 224 PRINTS DnaJ domain signature 53 73 IPR001623 -
Gso7g0380 224 PRINTS DnaJ domain signature 73 92 IPR001623 -
Gso7g0380 224 Coils Coil 51 71 - -
Gso7g0380 224 MobiDBLite consensus disorder prediction 137 167 - -
Gso7g0380 224 Gene3D DnaJ domain 7 134 IPR036869 -
Gso7g0380 224 CDD DnaJ 10 70 IPR001623 -
Gso7g0380 224 SUPERFAMILY Chaperone J-domain 7 93 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0380 Gso-Chr7 3585627 3589174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0380 12 78 C2H2 Transcription Factor Family AT1G74250 43.284 1.06e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0380 7 3585627 3589174 Gso7g0380 7 3585627 3589174 ECH