Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0367 ATGCAGAATCACAGGCTGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAGCTCTTATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCATATCCAAGTGGAAATTTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTCTCGGGTACTGGCCCAGTTGAAGGTTGTAAGCTTATCAGAAAGGATAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCATTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGGATGCACAAAGCTCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAGATACGTTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTTACAAATGGCTCATCTGAAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATGGAGGAGGTTCGGGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAACGCCCAGTCTCTTCTATGTGGAAAACCAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGCCTGTCTGCAACTGATCTTTTGGCGTATGAGCGACAGCTAGCAATTAGCAAGATGGGTGGCGTCCACGCCTTGATGCATCCTCAAGGACAACATCATCTTAAACAAGCAGCAGCTATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1278 0.4679 MQNHRLKQQQQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPYPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSGTGPVEGCKLIRKDKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGHSRGFGFVSFRNQQDAQSSINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKPIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAISKMGGVHALMHPQGQHHLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0367 425 MobiDBLite consensus disorder prediction 223 265 - -
Gso7g0367 425 Gene3D - 246 345 IPR012677 -
Gso7g0367 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Gso7g0367 425 Coils Coil 3 27 - -
Gso7g0367 425 MobiDBLite consensus disorder prediction 226 265 - -
Gso7g0367 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 341 IPR000504 GO:0003723
Gso7g0367 425 CDD RRM2_PUB1 146 220 - -
Gso7g0367 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Gso7g0367 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 128 IPR000504 GO:0003723
Gso7g0367 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 325 IPR000504 GO:0003723
Gso7g0367 425 Gene3D - 143 245 IPR012677 -
Gso7g0367 425 SUPERFAMILY RNA-binding domain, RBD 58 224 IPR035979 GO:0003676
Gso7g0367 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 423 - -
Gso7g0367 425 SUPERFAMILY RNA-binding domain, RBD 256 348 IPR035979 GO:0003676
Gso7g0367 425 Gene3D - 1 142 IPR012677 -
Gso7g0367 425 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 9 423 - -
Gso7g0367 425 CDD RRM3_TIA1_like 266 341 - -
Gso7g0367 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 134 IPR000504 GO:0003723
Gso7g0367 425 CDD RRM1_TIA1_like 62 132 - -
Gso7g0367 425 SMART rrm1_1 61 130 IPR000504 GO:0003723
Gso7g0367 425 SMART rrm1_1 146 219 IPR000504 GO:0003723
Gso7g0367 425 SMART rrm1_1 267 337 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0367 Gso-Chr7 3474822 3481348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0367 61 335 Eukaryotic Initiation Factors Gene Family AT3G16380 27.397 4.45e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0367 K13201 - gmx:100781227 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0367 7 3474822 3481348 Gso7g0367 7 3474822 3481348 ECH
Gso7g0367 7 3474822 3481348 Gso16g0080 16 914220 920544 GST