Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0349 ATGCCTTCCAAGAGGCTTCAATGGAGATCCTTAGTACTTGGTTGTTTCAAGGCCACCAAGAACCAATCCTTGGAATCTCCAAACATAGTTTCCAAGAAGTCATCTTCAAGTAGAATCTTCCTTTCTGATTTAAGCCTAAGCGATTATTCATCAGTTTCTATCATGAGTGATTTATCCAATTCTCTTGTGGGATCAAATCTTCGTATTTTCACCTACCAGGAGCTCTCAGAGGTTACACACAACTTCAGCAAATCCAACTATCTTGGGGAAGGTGGGTTTGGGAAGGTTTTTAAAGGGTTTATTGATGACAATCTTAAGCCTGGATTGAAAGCTCAGACTGTGGCAGTTAAGGCCTTAAACTTGGATGGAAAACAAGGCCATAGAGAGTGGTTGGCTGAAGTAGTCTTTCTGGGACAATTGAAACATAGGCATCTGGTTAACTTAATTGGCTACTGCTGTGAAGATGAGCATAGGCTTCTTGTGTATGAATACATGGAGAGGGGCAATCTAGAGGAAAAGCTTTTCAAAGGTTACTTAGCAGCCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCCGCAAAGGGACTTATGTTTCTTCATGAAGAAGAGAAACCAGTCATATATAGAGATATCAAGGCCTCAAACATTCTATTGGACGCTGATTACAATGCCAAGCTCTCTGATTTCGGTTTAGCAATAGATGGACCAGAAAAAGACCAAACACACATAACAACTCGTGTGATGGGTACGCATGGTTATGCTGCCCCTGAGTACATCATGACAGGCCATTTGACAACAATGAGTGATGTATATAGCTTTGGAGTTGTTCTCCTAGAGCTCCTCACAGGAAAGAAGTCTGTGGACAAGAAAAGACCCACCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAAGATTCCCATAAACTAGAAAGAATAATGGACACAAGACTTGAGGATCAGTACTCAACAGAAGGGGCTAGAAAATTTGCAGCCTTGGCTTATCAATGTCTTAGCCATCATGCAAAGGCTAGGCCCACCATGAGAACCGTGGTTAGGACCCTAGAGCCTCTATTGGAACTGAAAGATATCCCAGTTGGCCCATTTGTGTATGTGGTACCCAGTGAAGAAGAATCAACCAAAGTGAATGAAAAAGTAACAGAAAATGAGCATGTTGAGATCAACCAAGGTGAGTTAAAAAACAAAGAAAAAGAAGAAGAAGAAAAGGGAGACAAAAAAGAAAAGGGTCACCACCGGCAACGAAAAAGTCGTCGCAATAGACGTCGTGTTAAGCCACTGAGGTCTCTTACTGCTTACTCTGACACTGCTCTGTATAAAACTCTTGGTACAAATCTGTACTCTCCAAAACAATCACAATAA 1392 0.4181 MPSKRLQWRSLVLGCFKATKNQSLESPNIVSKKSSSSRIFLSDLSLSDYSSVSIMSDLSNSLVGSNLRIFTYQELSEVTHNFSKSNYLGEGGFGKVFKGFIDDNLKPGLKAQTVAVKALNLDGKQGHREWLAEVVFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLAALPWLTRIKIAIGAAKGLMFLHEEEKPVIYRDIKASNILLDADYNAKLSDFGLAIDGPEKDQTHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREQDLVEWARPLLKDSHKLERIMDTRLEDQYSTEGARKFAALAYQCLSHHAKARPTMRTVVRTLEPLLELKDIPVGPFVYVVPSEEESTKVNEKVTENEHVEINQGELKNKEKEEEEKGDKKEKGHHRQRKSRRNRRRVKPLRSLTAYSDTALYKTLGTNLYSPKQSQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0349 463 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0349 463 MobiDBLite consensus disorder prediction 419 436 - -
Gso7g0349 463 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Gso7g0349 463 Coils Coil 393 413 - -
Gso7g0349 463 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Gso7g0349 463 MobiDBLite consensus disorder prediction 384 418 - -
Gso7g0349 463 SMART serkin_6 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0349 463 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Gso7g0349 463 PANTHER OS01G0588500 PROTEIN-RELATED 29 418 - -
Gso7g0349 463 PANTHER BNAA02G16030D PROTEIN 29 418 - -
Gso7g0349 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gso7g0349 463 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
Gso7g0349 463 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Gso7g0349 463 CDD STKc_IRAK 88 362 - -
Gso7g0349 463 MobiDBLite consensus disorder prediction 384 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0349 Gso-Chr7 3280987 3283384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0349 68 394 Glycoside Hydrolase AT3G07070 47.734 1.68e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso7g0349 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0349 - - gmx:100790454 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0349 7 3280987 3283384 Gso7g0349 7 3280987 3283384 ECH
Gso7g0349 7 3280987 3283384 Gso14g0929 14 11725300 11728254 ECH
Gso7g0349 7 3280987 3283384 Gso16g0063 16 725050 727451 GST