LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g0335	ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGAGAGAGAGAACCAAGAGCGTGGAGCAGGAGGAGGAGGAGGGTACCATCATCCTTCTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTCTTCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTTAGCCACTCTGCTGCATCTCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAACGAGAAAGGTCCAAAGCTTGAGGACTTTTTGGGTGGCTACTCAAACTCCCCCACTAAGGTCTTTTGCCAAGACACTCAGCATGACCAAAACCAAAGCCAGAACAATGTTTCCAAAATCAATGTTAATGTAGCACCAAGCTTTTGCACCAATGCAGAGATTGAAACTGGGGAGAGCCTCGCTAACCCTTATCCCCACCAATCTTTCCATGCATATAATGATAACTCACATGCCCTTATCCCCACCAATGGCATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTTCTGATGGAAAACCTTCAACTGAAGCTAATGGGTGCAATTTCCAATCTCTGTCCCTCTCTATGAGCCCCGGTATGCAAAATGGGGTGGGTGCAATTTCCTCTGTTCAAGTGAGTGAGGATAGTAGGAAACGGGTCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGACAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTATGACTTAGCTGCAATCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGCGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGCTCCACTCTCATTGCAGGAGATCTTGCAAAACGGTCTCCTAAAGAATCACCAGCTCTGGTTCCTGCCGAGGACTTCAATTCGTGTGGTTCATCGATGCCGCCGGCATCTCAGCCCCCTCCTTTGGCTATAACTGATGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAGCGATGTGCATGCACAGAATGAGAATGGTGCTAACATCAACAACAATGTCACTGAATCATCATCACAACAGGTTTCACCAAGCAGCAACAAGGATGCTTTGAACCCTCAAAGCCCCAAGTGTTCTGTGGGGCTACCCAATGAGTTTGGAGTCAGTGGAGCAGATTATGGACATGGGTACTTCACCCTTGATGGACCAAAATATGATGATGGGAACAATGAAAACGACCACATGAGCACCAACAGGCTTGGAAATTTGGGATTGGTTAATCAAGTTCCCATGTTTGCTTTGTGGAACGAATGA	1740	0.4569	MSNWLGFSLTPHLRIDEEFERENQERGAGGGGGYHHPSPSSHPHLSVMPLRSDGSLCVADSFSHSAASQEWRYDSAIGGGNSNEKGPKLEDFLGGYSNSPTKVFCQDTQHDQNQSQNNVSKINVNVAPSFCTNAEIETGESLANPYPHQSFHAYNDNSHALIPTNGMYKSWLAQTQFSSDGKPSTEANGCNFQSLSLSMSPGMQNGVGAISSVQVSEDSRKRVMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAAIKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESPALVPAEDFNSCGSSMPPASQPPPLAITDGEHSDELSNMMWNANSDVHAQNENGANINNNVTESSSQQVSPSSNKDALNPQSPKCSVGLPNEFGVSGADYGHGYFTLDGPKYDDGNNENDHMSTNRLGNLGLVNQVPMFALWNE*	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso7g0335	579	ProSiteProfiles	AP2/ERF domain profile.	247	313	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	SUPERFAMILY	DNA-binding domain	348	409	IPR016177	GO:0003677
	Gso7g0335	579	CDD	AP2	348	409	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	4	502	-	-
	Gso7g0335	579	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM	4	502	-	-
	Gso7g0335	579	MobiDBLite	consensus disorder prediction	485	518	-	-
	Gso7g0335	579	CDD	AP2	246	315	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	SMART	rav1_2	247	319	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	SMART	rav1_2	349	413	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	Pfam	AP2 domain	247	305	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	Pfam	AP2 domain	348	399	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	ProSiteProfiles	AP2/ERF domain profile.	349	407	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	MobiDBLite	consensus disorder prediction	428	466	-	-
	Gso7g0335	579	MobiDBLite	consensus disorder prediction	21	47	-	-
	Gso7g0335	579	PRINTS	Ethylene responsive element binding protein signature	248	259	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	PRINTS	Ethylene responsive element binding protein signature	389	409	IPR001471	GO:0003700\|GO:0006355
	Gso7g0335	579	SUPERFAMILY	DNA-binding domain	246	315	IPR016177	GO:0003677
	Gso7g0335	579	Gene3D	AP2/ERF domain	246	315	IPR036955	GO:0003700\|GO:0006355
	Gso7g0335	579	Gene3D	AP2/ERF domain	349	409	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g0335	Gso-Chr7	3157413	3161449	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso7g0335	1	437	AP2-EREBP Transcription Factor Family	AT1G72570	51.820	8.92e-142	415

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Gso7g0335		AP2	1.3e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g0335	K09285		-	gmx:100805489	1146.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0335	7	3157413	3161449	Gso7g0335	7	3157413	3161449	ECH
	Gso7g0335	7	3157413	3161449	Gso16g0054	16	618536	622561	GST