Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0316 ATGAAGAACTTATGTGAGAATGGCTCTGGTCCTACCCATTTAACATCTTATGCTCTTGGATGCTCATCATGGGGGACTTCCTCTGAATCTGATGTGCAACAATCATCCATGTCCAAAAGTTTGAGCTTGAAAATGAGTGTTCTGCCGCAACAATGCCATAAGACCAAACCATTGAGTTTTCAATATCAAGATCGAGATTCATCTTCAACTCAATCAACCGGTCAGTCTTATCCAGAAGTTGGTTCAGCACAATCAGTGCAGTGTAGCAATTCTTCTGCTAGTTCAACACACAACACAACTGGGGGAAAGAGTGTGGAAGGTGTCATCGGGTCAACTGTGGGGATTCAGGATTGTACCTTCCCTCCTTCACAACTGTGTTACAACCAATCACTTGCTCATACTGCATTCCACTTTGCTGAGCCGTGCTTTAGTGGCCTACTAGCTGCTCCATTTGTGCCACAATCTAATATTCATCATGCTCAGCTACTAGGAATGACTCCTGCTCGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCCATGTATGTGAACGCAAAGCAGTACCATGCTATTCTGAGACGCAGGCAGTATCGTGCAAAACTGGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCATGAGTCCCGCCATCTACATGCACTGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTTTGAATGCCAAAAAGCTCCAAGAGTTGAAACTCACTTCAGCAAACCGTGGCCTAGATGTTTCTGGCTGTACTCAATTGAATCTGAGTGGAAATATGTCAGAATCAAAGGTTCAAGCAGTAGAAAACTTGAACTACAGAAATGGTGCTTCTACAACCACGTGTTCTGATGTCATTAGTACATCTAATAGTGATGATGTCTTCCAGCAACATGAGTCAGACTTTAGGTTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTATTCCGCAGACATTGGTGGTGGTGGTGGTGGTGGAAATCAACACCGTCTATCAGTCCTTATGTGA 1035 0.4415 MKNLCENGSGPTHLTSYALGCSSWGTSSESDVQQSSMSKSLSLKMSVLPQQCHKTKPLSFQYQDRDSSSTQSTGQSYPEVGSAQSVQCSNSSASSTHNTTGGKSVEGVIGSTVGIQDCTFPPSQLCYNQSLAHTAFHFAEPCFSGLLAAPFVPQSNIHHAQLLGMTPARIPLPLDLSEEPMYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNAKKLQELKLTSANRGLDVSGCTQLNLSGNMSESKVQAVENLNYRNGASTTTCSDVISTSNSDDVFQQHESDFRLCGYPSHIGRNMQGYSADIGGGGGGGNQHRLSVLM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0316 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 179 234 IPR001289 GO:0003700|GO:0006355
Gso7g0316 344 Gene3D - 177 238 - -
Gso7g0316 344 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 18 309 - -
Gso7g0316 344 ProSitePatterns NF-YA/HAP2 subunit signature. 182 202 IPR018362 GO:0003677|GO:0016602
Gso7g0316 344 PRINTS CCAAT-binding transcription factor subunit B signature 180 202 IPR001289 GO:0003700|GO:0006355
Gso7g0316 344 PRINTS CCAAT-binding transcription factor subunit B signature 211 234 IPR001289 GO:0003700|GO:0006355
Gso7g0316 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 309 IPR001289 GO:0003700|GO:0006355
Gso7g0316 344 SMART cbf3 176 237 IPR001289 GO:0003700|GO:0006355
Gso7g0316 344 MobiDBLite consensus disorder prediction 59 81 - -
Gso7g0316 344 ProSiteProfiles NF-YA/HAP2 family profile. 177 237 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0316 Gso-Chr7 2945027 2949664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0316 23 342 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.342 1.26e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso7g0316 CBFB_NFYA 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0316 K08064 - gmx:100500765 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0316 7 2945027 2949664 Gso7g0316 7 2945027 2949664 ECH
Gso7g0316 7 2945027 2949664 Gso16g0037 16 392739 396490 GST
Gso15g0243 15 2205028 2208483 Gso7g0316 7 2945027 2949664 PCT
Gso7g0316 7 2945027 2949664 Gso15g0243 15 2205028 2208483 PCT