Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0315 ATGGACTCACGCACGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACTGATGTTGAAGATTTTTACAACCAATGTGATCCTGAGAAAGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCCGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGCGAGCTTCGGAATCTCAGGCTAGACAGCCAAAGCCATTGCAATCAAAAGAAGAGGATGAAGAACTGGACGATCAAGATGACGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAACATTATGGCACTGATGAATTCTGGATTTGTTGTGACATCTGTGAGAAGTGGTTCCATGGTAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 756 0.4511 MDSRTYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKRASESQARQPKPLQSKEEDEELDDQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0315 251 Pfam PHD-finger 198 247 IPR019787 -
Gso7g0315 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Gso7g0315 251 SMART PHD_3 197 245 IPR001965 -
Gso7g0315 251 MobiDBLite consensus disorder prediction 149 173 - -
Gso7g0315 251 MobiDBLite consensus disorder prediction 144 191 - -
Gso7g0315 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Gso7g0315 251 PANTHER CPG BINDING PROTEIN 5 251 IPR045104 GO:0006355|GO:0042393
Gso7g0315 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Gso7g0315 251 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 5 251 - -
Gso7g0315 251 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Gso7g0315 251 CDD PHD_AL_plant 197 247 IPR044104 -
Gso7g0315 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0315 Gso-Chr7 2938424 2942273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0315 6 250 Alfin-like Transcription Factor Family AT3G42790 76.423 1.79e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso7g0315 Alfin 3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0315 - - gmx:100794662 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0431 17 3916809 3920756 Gso7g0315 7 2938424 2942273 ECH
Gso7g0315 7 2938424 2942273 Gso7g0315 7 2938424 2942273 ECH
Gso7g0315 7 2938424 2942273 Gso16g0036 16 385195 389237 GST
Gso15g0242 15 2199107 2204116 Gso7g0315 7 2938424 2942273 PCT
Gso11g3567 11 51402655 51406270 Gso7g0315 7 2938424 2942273 PCT
Gso7g0315 7 2938424 2942273 Gso15g0242 15 2199107 2204116 PCT
Gso7g0315 7 2938424 2942273 Gso11g3567 11 51402655 51406270 PCT