Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0297 ATGGTTGGAGGTTCATTAGCAGGGTTGCAAGAGCATCTCAAGTTAGCCCGAGACTACGCTCTCGAAGGCCTCTACGACACCTCCATCATCTTCTTCGACGGCGCCCTCGCCCAGATCAACAAGCACCTAAGCACTGTCCAAGACCCTTTAATCCGCGCGAAATGGATGAACGTAAAGAAATCACTTTCGGAGGAAACAGAAGTGGTAAAGCAGCTAGATGCAGAGAGAAGGGCTTTCAAAGACAACCCCATTGGCAGACGCCCTGCTTCGCCTCCCATTTCGGTGAAGTCATCATCGTCTTTCGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCCAGCGGTTCTGGTCCCGTTGATGATCCTGATGTGTGGCGGCCGCCCAGCAGGGACACCACCAGCCGGAGACCGGCGCGGCCCGGTCAAGTGGGTGCTCGGAAATCGGCCCAAGACGGGGCTTGGGCGCGTGGCGCTACAACCAGAAGTGGTGCCGCTGGGCGTGGTGCTAAGGCCGGTGCTACCGGTAGGGTTAACTCCGGGACTCGAGCTTCGACTACCGGAAAGAAGGGTGGCGCTGCTTCTGGAAAGGCTAGCAAGACGGATGCCGCTGCTGCAGCTGTAACTAATGGCGATGCTGAAGATGGTAAGTCAAAGAAGCCTCAATATGAAGGTCCTGATCCAGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCTACTTTAGCTTCTAAATGGCGTGGGGAGAGTGAGCGCATGGTGAGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATTCTAGGGGGGCTTCTGGTGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCTACTAACTTCCCTTGGGATATTGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGGTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATATAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAATGGTATGAGGCGCAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGGAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA 1596 0.4931 MVGGSLAGLQEHLKLARDYALEGLYDTSIIFFDGALAQINKHLSTVQDPLIRAKWMNVKKSLSEETEVVKQLDAERRAFKDNPIGRRPASPPISVKSSSSFVFQPLDEYPTSSSGSGPVDDPDVWRPPSRDTTSRRPARPGQVGARKSAQDGAWARGATTRSGAAGRGAKAGATGRVNSGTRASTTGKKGGAASGKASKTDAAAAAVTNGDAEDGKSKKPQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALGKVQRSVSQADIERHEKWFTEFGSA* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0297 531 Gene3D - 241 522 IPR027417 -
Gso7g0297 531 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 531 - -
Gso7g0297 531 Pfam ATPase family associated with various cellular activities (AAA) 283 420 IPR003959 GO:0005524|GO:0016887
Gso7g0297 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 517 IPR027417 -
Gso7g0297 531 Pfam AAA+ lid domain 442 483 IPR041569 -
Gso7g0297 531 SMART AAA_5 279 422 IPR003593 -
Gso7g0297 531 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 531 IPR028596 GO:0008017|GO:0008568|GO:0051013
Gso7g0297 531 Gene3D - 421 507 - -
Gso7g0297 531 PANTHER AAA DOMAIN-CONTAINING 4 531 - -
Gso7g0297 531 Gene3D - 4 80 - -
Gso7g0297 531 MobiDBLite consensus disorder prediction 212 226 - -
Gso7g0297 531 MobiDBLite consensus disorder prediction 79 98 - -
Gso7g0297 531 Coils Coil 62 82 - -
Gso7g0297 531 CDD AAA 277 420 - -
Gso7g0297 531 ProSitePatterns AAA-protein family signature. 392 411 IPR003960 GO:0005524|GO:0016887
Gso7g0297 531 Pfam Vps4 C terminal oligomerisation domain 484 529 IPR015415 -
Gso7g0297 531 MobiDBLite consensus disorder prediction 106 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0297 Gso-Chr7 2675214 2679529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0297 235 523 Calmodulin-binding Proteins AT3G56690 39.933 1.55e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0297 K07767 - gmx:100787634 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0297 7 2675214 2679529 Gso7g0297 7 2675214 2679529 ECH