Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0262 ATGGGCCGTGCAAGAATAACCTTGAAACCTATTTCAAATGAGAGATCTCGTAAGTCAACTTTCAAGACGAGAAAGGAAGGACTAATTACAAAAATTTCTCAACTTTCCACCATGTGTGGAGTTGAAGCCTGCTTGATTGTGTATGATGACATCAATGGTGATGTTGGAGCTGTGACTTGGCCTGAAAACCCCACATTGGTACGTCCCATCATTGAAAACTATGAGCGTCAAAGGGCTGAAAAACCTCCCAAGACCTTTGTTATTCAAGACTTTTTCGAGAATAGGAAGAACATGGTTGAAGCTGAGATTTCCAAATTGCATAAACAGGCCAGAGAGATCAAGTATCCAACTTGGGATCCAAGTTTGAGTAATATGGAAAAGGAGCAATTGAGTGCATTCATTGCTAATGTGAATGCTAAGATTGAAGCTTGTGACCAGAGAATTCACATCAAATCCATGCAAAATATGGCTAAGGAAAGTGCTTCTTCCTCCCATTCAAGCCAACTCAATTTCATGCAAAACATTTCTCAAAGCCAAATGATCCCTACTTATGTAGAGCCACTACTTAATGATAATAATAATGGGAGGGTGTTGAATTCAACAAATCAGGTTGGTGGAGCTTCTAGTCATGGAGTTAACATGTTGAGAAACATTCAACAAGGTAATTTTTGCGTTAGTTACATGCCAAGCATGGCTCAGAGCCAAATGATCGCACTTGAAACTTTTAAGTCACTTAAAGGAAAAAATAAGATGGTAGATTTTACTAATCAAGTTGTTGTTCCTCTAGATTCAACTAATCATCAACTTGGTGAGTCTTTGGATTGGGCTAATCACCATGGTAGCTTTGACTGGGCTAATGGACCCATTGGAATTGAGGATTGGTCGAATCCACTAAATGGTGATCTTGTGGGTAGTCAACCTGATGAATCAGTCTTGCAGAATATTCCCATTCAATCTCAGAATGATTATCAAGGAGCAGTTTTACCTACCTTGCCACTATCATTGGATGGATTTCAAACAGATTGCCGTAATATGTTTTTTCGAATGAGTAACTCCAAGTAA 1062 0.3898 MGRARITLKPISNERSRKSTFKTRKEGLITKISQLSTMCGVEACLIVYDDINGDVGAVTWPENPTLVRPIIENYERQRAEKPPKTFVIQDFFENRKNMVEAEISKLHKQAREIKYPTWDPSLSNMEKEQLSAFIANVNAKIEACDQRIHIKSMQNMAKESASSSHSSQLNFMQNISQSQMIPTYVEPLLNDNNNGRVLNSTNQVGGASSHGVNMLRNIQQGNFCVSYMPSMAQSQMIALETFKSLKGKNKMVDFTNQVVVPLDSTNHQLGESLDWANHHGSFDWANGPIGIEDWSNPLNGDLVGSQPDESVLQNIPIQSQNDYQGAVLPTLPLSLDGFQTDCRNMFFRMSNSK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0262 353 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso7g0262 353 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Gso7g0262 353 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Gso7g0262 353 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Gso7g0262 353 PANTHER PROTEIN, PUTATIVE-RELATED 3 278 - -
Gso7g0262 353 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Gso7g0262 353 PANTHER MADS BOX PROTEIN 3 278 - -
Gso7g0262 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0262 Gso-Chr7 2428351 2429412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0262 1 147 Type I MADS-box Gene Family AT5G55690 33.113 2.75e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso7g0262 SRF-TF 3.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0262 - - gmx:106799207 680.633