Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0223 ATGTGGAATCCTCTGTCATGGGTCATGGAAGCGGCTGCTATCATGGCGATTGCATTGGCCAATGGAGGGGGCAGGCCACCAGATTGGCAGGACTTCGTGGGAATACTAGCATTGCTTGTTATCAACTCCACCATTAGTTTTATTGAAGAAAATAATGCCGGCAATGCTGCTGCTGCACTTATGGCAGGTCTTGCTCCGAAAACTAAGGTTCTAAGGGACGGAAAGTGGACCGAGGAGGATGCTGCTATATTGGTACCAGGAGACATTATCAGCATCAAGTTAGGAGACATCGTCCCAGCTGATGCTCGTCTCTTGGATGGTGATCCACTCAAGATTGATCAATCTGCACTTACTGGCGAATCATTGCCTGTTTCAAAGAATCCAGGTGATGAAGTCTTCTCCGGGTCTACAGTTAAGCAAGGAGAGCTTGAGGCTGTTGTAATCGCTACTGGGGTACACACCTTTTTTGGTAAGGCTGCTCACTTGGTGGACAGCACTAACCAAGAAGGGCATTTTCAGAAGGTATTAACAGCCATTGGTAACTTCTGCATTTGCTCAATAGCTGTGGGTATGGTCATAGAGATCATTGTCATGTACCCAATTCAGCACCGACCTTATAGGAGTGGAATTGACAATCTCTTGGTGCTGCTCATTGGAGGGATTCCTATTGCCATGCCAACGGTTTTGTCAGTGACTATGGCTATTGGTTCTCATCGGCTGTCCCAACAAGGTGCTATCACTAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTTTATGCAGTGACAAGACTGGCACTCTAACTCTGAACAAGCTCACTGTAGACAAGACTTTGATTGAGGTTTTTGCAAAAGATGCCGACAAAGACACTGTAATTTTACTTGCAGCTAGAGCGTCTAGGGTAGAGAATCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAAGGAGGCCAGAGATGGCATCAAAGAGGTCCATTTCTTACCCTTTAATCCAGTGGACAAGCGTACGGCCATCACATATATAGACAACAATGGCAATTGGAACCGAGCAAGCAAAGGGGCACCAGAGCAGATTATACATCTCTGCAATCTCCGGGAAGATGTGAAGAAGAAAGCTCATGCTATTATTGGAAAATTTGCTGATCGGGGTCTTCGTTCCCTTGCTGTTGCCAAGCAAGAAGTTCCAGAGAAGACCAAGGAGAGTCCAGGAGGACCATGGCAGTTTGTGGGTCTCTTGCCTCTCTTTGACCCTCCTAGGCATGACAGTGCAGAGACCATTCGCCGTGCTCTCCATCTTGGAGTGAACGTTAAGATGATTACAGGCGATCAGCTAGCTATTGGAAAGGAGACTGCTCGCAGGCTTGGCATGGGAAGTAACATGTACCCTTCTTCCTCCCTCCTTGGCGATCACAAGGATGAGTCTATTGCTGCACTTCCAGTTGATGAGCTTATTGAAAAGGCTGATGGCTTTGCTGGTGTCTTTCCTGAGCACAAATATGAGATTGTGAAGATACTCCAGGATAGAAAGCATATATGTGGGATGACTGGAGATGGTGTCAATGATGCTCCTGCCCTAAAAAAGGCAGACATTGGGATTGCAGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCAGACATAGTTCTTACAGAGCCTGGTCTGAGTGTGATTGTGAGTGCAGTTTTGACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTATGCTGTTTCTATCACAATCCGAATCGTGCTGGGCTTTATGCTGCTAGCTCTTATCTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCAATACTAAATGACGGAACAATTATGACCATTTCCAAGGACAGAGTGAAGCCATCACCTCTGCCAGATTCATGGAAGTTGAATGAGATTTTTGCCACAGGCATAGTGCTTGGTGCCTACCTTGCTATAATGACTGTTGTCTTCTTCTGGGCTGCTCATGCTTCTGATTTCTTCACGGAAAAATTTGGTGTCAGACCTATCAGGAATGTCCAGGATGAGCTCACAGCGGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAGGCTCTCATCTTTGTTACTCGGTCAAGGAACTTCTCTTTTCTTGAGCGCCCTGGTCTCTTGCTTGTTACAGCCTTTATAATAGCACAGCTGATTGCCACACTCATAGCTGTCTATGCAAACTGGGGCTTTGCAAGGATGAGAGGTATTGGGTGGGGCTGGGCTGGTGTCATTTGGCTTTACAGCATCATTTTCTACATTCCGTTGGATTTTCTTAAATTCGGCATTCGATATTTTTTGAGTGGCAAGGCATGGAATAATATTACCGAGAACAAGACTGCTTTCACAACAAAGAAGGATTATGGAAAGGAAGAGCGAGAAGCACAATGGGCCACAGCTCAACGCACCCTACATGGGTTGAATCCTCCAGAAACAGAACAGATATTTAGTGAAAAGAACAACTACCGCGAATTATCTGAAATCGCAGATCAGGCTAGGAAACGAGCAGAAGTTGCAAGATTGCGGGAGCTTCACACATTGAAGGGACATGTCGAATCCGTCGTGAAACTCAAGGGACTGGACATTGATACAATTCAGCAGCATTACACTGTTTGA 2658 0.4582 MWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGILALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEDAAILVPGDIISIKLGDIVPADARLLDGDPLKIDQSALTGESLPVSKNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQHRPYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFAKDADKDTVILLAARASRVENQDAIDACIVGMLGDPKEARDGIKEVHFLPFNPVDKRTAITYIDNNGNWNRASKGAPEQIIHLCNLREDVKKKAHAIIGKFADRGLRSLAVAKQEVPEKTKESPGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGDHKDESIAALPVDELIEKADGFAGVFPEHKYEIVKILQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYLAIMTVVFFWAAHASDFFTEKFGVRPIRNVQDELTAAVYLQVSIVSQALIFVTRSRNFSFLERPGLLLVTAFIIAQLIATLIAVYANWGFARMRGIGWGWAGVIWLYSIIFYIPLDFLKFGIRYFLSGKAWNNITENKTAFTTKKDYGKEEREAQWATAQRTLHGLNPPETEQIFSEKNNYRELSEIADQARKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0223 885 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 1 740 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gso7g0223 885 Gene3D - 275 422 IPR023299 GO:0000166
Gso7g0223 885 Pfam E1-E2 ATPase 65 242 - -
Gso7g0223 885 Gene3D - 260 559 IPR023214 -
Gso7g0223 885 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Gso7g0223 885 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Gso7g0223 885 Gene3D - 66 150 - -
Gso7g0223 885 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 497 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 35 297 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 CDD P-type_ATPase_H 1 775 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gso7g0223 885 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Gso7g0223 885 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 PRINTS H+-transporting ATPase (proton pump) signature 694 715 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso7g0223 885 PANTHER CALCIUM-TRANSPORTING ATPASE 1 856 - -
Gso7g0223 885 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 1 856 - -
Gso7g0223 885 Gene3D - 834 885 - -
Gso7g0223 885 SUPERFAMILY HAD-like 259 569 IPR036412 -
Gso7g0223 885 Coils Coil 836 856 - -
Gso7g0223 885 SFLD p-type atpase 245 574 IPR044492 -
Gso7g0223 885 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Gso7g0223 885 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Gso7g0223 885 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Gso7g0223 885 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Gso7g0223 885 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Gso7g0223 885 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Gso7g0223 885 SFLD C1.7: P-type atpase like 245 574 - -
Gso7g0223 885 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 782 IPR023298 -
Gso7g0223 885 Gene3D - 28 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0223 Gso-Chr7 2051157 2055901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0223 1 885 Primary Pumps ATPases AT3G42640 83.616 0.0 1511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0223 K01535 - gmx:100818997 1709.89