Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0180 ATGGCGAAGAAATCACAGAAAAGCCTCAACAGCACTGGGAAGCGCACACGCAAAAGCGTCCCAAGAGACTCACCTCCACAACGAAGTTCAATCTATAGGGGTGTCACAAGGCATCGATGGACTGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTATCAAATTATGAGGAAAAGCTCAAGGAGATGGAGGGCCAGTCAAAAGAAGAATATATTGGATCCTTGAGAAGAAAAAGCAGTGGATTCTCTCGAGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCGCAGCATATGACATGGCAGCAATAGAATACAGAGGACTTAACGCGGTTACAAACTTTGACCTGAGCCGTTATATCAATTGGCCACGTCCTAAAACAGAAGAAAATCATCAAACTATTCCTAGCAATGAAAATGTAAACTCTAATGCTGAACTTGAGCTAGGTTCGGCTAGTGATGAGATCACAGAAGAGGGTGTAGCACCATCTTCAGAATCAAATCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAAAATCAAGATTCAGGCATCTACACTGAAAATGATGATATCATTTTTGGTGACCTGGGCTCCTTTGGTGCACCAATTTTTCATTACGAGCTTGATGTTTAG 864 0.4317 MAKKSQKSLNSTGKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGLNAVTNFDLSRYINWPRPKTEENHQTIPSNENVNSNAELELGSASDEITEEGVAPSSESNPSRRTFPEDIQTIFENQDSGIYTENDDIIFGDLGSFGAPIFHYELDV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0180 287 Pfam AP2 domain 31 86 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 Pfam AP2 domain 129 180 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 Gene3D AP2/ERF domain 31 96 IPR036955 GO:0003700|GO:0006355
Gso7g0180 287 Gene3D AP2/ERF domain 129 190 IPR036955 GO:0003700|GO:0006355
Gso7g0180 287 MobiDBLite consensus disorder prediction 1 15 - -
Gso7g0180 287 ProSiteProfiles AP2/ERF domain profile. 31 94 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 PRINTS Ethylene responsive element binding protein signature 170 190 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 219 - -
Gso7g0180 287 SMART rav1_2 130 194 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 SMART rav1_2 31 100 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 CDD AP2 129 190 IPR001471 GO:0003700|GO:0006355
Gso7g0180 287 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 219 - -
Gso7g0180 287 SUPERFAMILY DNA-binding domain 30 96 IPR016177 GO:0003677
Gso7g0180 287 SUPERFAMILY DNA-binding domain 129 190 IPR016177 GO:0003677
Gso7g0180 287 MobiDBLite consensus disorder prediction 1 34 - -
Gso7g0180 287 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0180 Gso-Chr7 1646034 1650389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0180 27 192 AP2-EREBP Transcription Factor Family AT5G57390 72.781 1.72e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso7g0180 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0180 K09285 - gmx:100807781 565.844