Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0170 ATGACAGAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGCTGCCAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAATCAAGGAAGATCCTGCAGTTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCGTATGTGACTTATGGATACCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCATTATGTTGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 741 0.448 MTEMGEEVKVVVPESVLKKRKREEEWALAKKQELDAAKKKRAESRKLIYNRAKQYAKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLMKQRTALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0170 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Gso7g0170 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Gso7g0170 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Gso7g0170 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Gso7g0170 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Gso7g0170 246 PANTHER 60S RIBOSOMAL PROTEIN L7 8 246 IPR039699 -
Gso7g0170 246 Gene3D - 87 189 IPR036919 -
Gso7g0170 246 Gene3D - 190 246 IPR036919 -
Gso7g0170 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Gso7g0170 246 Coils Coil 52 72 - -
Gso7g0170 246 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 8 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0170 Gso-Chr7 1577447 1579473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0170 1 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.366 2.40e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0170 K02937 - gmx:100305682 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0170 7 1577447 1579473 Gso7g0170 7 1577447 1579473 ECH