Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0142 ATGCGTGAGAAATTTCACTTGTGCCACTCCTTTACTCCTCAAAACCCCACCATCAGTGTCTCACACAGCAAACCAAAGCAAAGGAATCCTCATTCCTTCCATCAAAACGGTGCGCTTCGCTCCCTCTCTCTAAAACCAACACATACTACTTCTCTTCAGCTTCTCCCACTAAAACACACTATCTATATGGAAGTGCCGGAATACTTCGTCGGAAGCTTTTTTGGCACCGGAGGAGCCGAACAGTTCTGCCCTCCGGAGAAGCGCCACTCCGACCAGAAAACCGGCGAGCCTTTCGCCATTGACGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTCGCCGGAAACTCCACCGACTCCTCCACCGTCACCGCCGTCGACAGCTGCAACTCCTCAATTTCGGGCAGCGACAACCGCTTCGCCACCACCATTGTCCCTCGCGGCTTCCCCAGTGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGATGAAATGGCGGAACTGGAATGGCTCTCTAACTTCGTGGAAGACTCGTTCTCCGCCGAGGAGGAGCTGAAGACGCTGCAGCTACTCTCCGGCGCCGCCGCCGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCGGAGTCCTCCTCCTCCACCGACACGCTTCCGCCGTTCGCCTCCGACGACACCTTGCGAAACGCACCGTTTCTCCACTCGGAAACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGGGCGGCGCCGGGGGACTGGTCCACGCGCCTGCTCCACCTGGTCGCGACGGAGCAGGAGAAGCTGCCGCAGCTAAAGGCGGAGCCGGCGAAGAAGAGAGAAGGAACGAATGCGGAGTGTTCCGGACGCAAATGCCTGCACTGCGGTACGGAGAAGACGCCGCAGTGGAGAACGGGACCGATGGGACCGAAGACGCTGTGCAACGCGTGCGGCGTAAGGTTCAAGTCCGGGAGGCTGGTGCCGGAGTACCGACCGGCAGCGAGTCCAACGTTCATGTCAACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGCTGCAGCGACAGCAGCACCAGCAATTGATGAGTCAAAGTTCAATTTTCGGCGTATCCAACGGTGAGGATGAGTTCTTGATCCATCATCATCACCAGCATTGTGGGCCAGACTTTAGACACGTTATTTAG 1230 0.5797 MREKFHLCHSFTPQNPTISVSHSKPKQRNPHSFHQNGALRSLSLKPTHTTSLQLLPLKHTIYMEVPEYFVGSFFGTGGAEQFCPPEKRHSDQKTGEPFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFATTIVPRGFPSDPQFSGELCVPYDEMAELEWLSNFVEDSFSAEEELKTLQLLSGAAAASTAIGAKPQTPESSSSTDTLPPFASDDTLRNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVATEQEKLPQLKAEPAKKREGTNAECSGRKCLHCGTEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFMSTKHSNSHRKVLELRRQKELQRQQHQQLMSQSSIFGVSNGEDEFLIHHHHQHCGPDFRHVI* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0142 409 MobiDBLite consensus disorder prediction 212 230 - -
Gso7g0142 409 Pfam GATA zinc finger 301 334 IPR000679 GO:0006355|GO:0043565
Gso7g0142 409 Coils Coil 359 379 - -
Gso7g0142 409 PANTHER GATA TRANSCRIPTION FACTOR 63 409 - -
Gso7g0142 409 SMART GATA_3 295 345 IPR000679 GO:0006355|GO:0043565
Gso7g0142 409 Gene3D - 295 345 IPR013088 GO:0006355|GO:0008270
Gso7g0142 409 CDD ZnF_GATA 300 347 IPR000679 GO:0006355|GO:0043565
Gso7g0142 409 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 298 358 - -
Gso7g0142 409 MobiDBLite consensus disorder prediction 210 262 - -
Gso7g0142 409 ProSitePatterns GATA-type zinc finger domain. 301 326 IPR000679 GO:0006355|GO:0043565
Gso7g0142 409 ProSiteProfiles GATA-type zinc finger domain profile. 295 331 IPR000679 GO:0006355|GO:0043565
Gso7g0142 409 PANTHER GATA TRANSCRIPTION FACTOR 9 63 409 - -
Gso7g0142 409 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0142 Gso-Chr7 1363414 1365081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0142 96 409 C2C2-Gata Transcription Factor Family AT4G32890 47.531 5.36e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso7g0142 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0142 - - gmx:100776605 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0142 7 1363414 1365081 Gso7g0142 7 1363414 1365081 ECH
Gso7g0142 7 1363414 1365081 Gso8g1680 8 16467052 16468493 GST