Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0140 ATGTCCTGCAAGGATGGTAGCAGAAACGGAATCGGAATGGATAACGGGAAGTATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTAGAAAGGCTCTATCACGATTGCCCCAAACCTAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCCATTCTCTCCAACATCGAACCCAAGCAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTCCAAGCTGTCAATAGGAAGCTGACTGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGTCAGCAGCACAATTTGATAACTCAACATCCCCCACGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCAGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCTCCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGAAGCCTAGTGATCTGCGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCCGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGTGGTTCGATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTCACTGGGTGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTCGGCCCTTGCAGCCTATCAGGATCTCGTGTTGGAAACTATGGAGGTCAAGTTATACTCCCCCTAGCACACACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAATAGCTCATTCTCCTGAAGACACAATAATGCCTAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTCCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACACTTGACCTTGCATCTGCCCTTGACGTTGGTCCCAGTGGAAACCGAGCTTCAAATGGATGTGCTAATTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGCCAATATGTTCGGAGCATTATATCTTCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAACAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAGACCACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCACAGATTATCCAACAGGGTTTTGCATGTCTTCAAGGTGGCATTTGTCTTTCAAGCATGGGGCGACCTGTCTCATATGAAAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2517 0.4617 MSCKDGSRNGIGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQITTQATKDTNCESVVTSGQQHNLITQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDQPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRASNGCANSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSFV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0140 838 CDD START_ArGLABRA2_like 156 371 - -
Gso7g0140 838 SUPERFAMILY Bet v1-like 398 597 - -
Gso7g0140 838 Gene3D - 196 377 IPR023393 -
Gso7g0140 838 Gene3D - 12 83 - -
Gso7g0140 838 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Gso7g0140 838 Coils Coil 82 113 - -
Gso7g0140 838 Pfam MEKHLA domain 695 837 IPR013978 -
Gso7g0140 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Gso7g0140 838 SUPERFAMILY Bet v1-like 161 371 - -
Gso7g0140 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Gso7g0140 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Gso7g0140 838 CDD bZIP 69 108 - -
Gso7g0140 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Gso7g0140 838 SMART START_1 161 371 IPR002913 GO:0008289
Gso7g0140 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Gso7g0140 838 Pfam START domain 162 370 IPR002913 GO:0008289
Gso7g0140 838 ProSiteProfiles START domain profile. 152 366 IPR002913 GO:0008289
Gso7g0140 838 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0140 Gso-Chr7 1337213 1356919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0140 1 790 Homeobox Transcription Factor Family AT1G52150 84.761 0.0 1387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso7g0140 START 1.6e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0140 K09338 - gmx:100819365 1682.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0140 7 1337213 1356919 Gso7g0140 7 1337213 1356919 ECH
Gso7g0140 7 1337213 1356919 Gso8g1679 8 16451032 16459353 GST