Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0130 ATGATGGTTCTGGTGCAAAAACCCCATTGGGGGTTGCTTCTTCTCTTTCTCCTCTTTCAGCTCCACCTTCACTGCAGCACCTGCTACCCCACAGAACCCATGAACTGTACGGACACAAGCCGTGTTTGCACTTCTTTCATGGCCTTCAAGCGTGGACCGAACCACACACTTGCTCTGATTGAAAGCATGTTTGATGTTTTGCCTGGTGACATCACAGTTGAAGGCAACGGTTGGGGTTACATGTTCATAAGGAAGAACTGTTCTTGTGCTGCTGGCATAAAAAAATACGTGTCCAACACCACTTTCACTGTGAAATCCAATGAGGGGTTGGTGTATGACATGGTGATGGATGCCTATGATGGCCTTGCTTTCCTTCCCAACACTACCAGGATGGCCAGGAATGGTGCTGTTGTGTCACTGAGGTTGTTCTGTGGCTGCTCCAGTGGACTGTGGAACTATTTAGTCAGTTATGTGATGAGAGATGGGGATAGTGTTGAGTCCTTGGCAAGCAGATTTGGGGTTAGTATGGATAGCATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCCCTTGATTCTGCAGTTCCTGGTGATTCTTATCCCCTGAATAATGCTGCTCCACCGGTTCCTGTTCTTTCCCCATCCTTTGATAATTTTTCAGCTGATCAAGTCAATCATAAGGCTCATGTACCCTATGGATGGATCGTTGGGGGTTTAGGAGTTGCGCTTGTTCTAATAATATTAACTGTTATTCTCTGTGTTTGTCTGAGATCATCAAATTGTTTTGCTGATACCAGAACTCATGAGAAAGATGCTGAGGGCAAGATCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGATCAGAAGCAAACAGATGGTGAATCCAGCAATCACACAATTATGGTTCCCAAAGCTTCAACTCTTTGGCCTGACGTATTTGACATGGATAAGCCTGTTGTCTTTACATATGAAGAGATTTTCTCCACTACTGATGGTTTCTCTGATTCAAGTCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTCCGTGATCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACCAAAGAGTTTATGTTAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTAGTATATGAATATGCTCAGAAGGGTTCACTCAAAAGCCATTTGCATGATCCTCAAAATAAGGGTCACTCCCCGCTTTCTTGGATCATGAGGGTTCAGATTGCAATTGATGCTGCTAGGGGCCTTGAATACATACATGAGCACACAAAAACTCATTATGTTCACCGTGATATCAAGACAAGTAACATTTTACTTGATGCTTCCTTTAGAGCAAAAATTTCAGATTTTGGGTTAGCGAAACTTGTTGGGAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCGGAATATTTGAGTGATGGTCTTGCGACCACTAAAAATGATGTCTACGCATTTGGTGTTGTCCTTTTTGAGATCATATCAGGAAAAGAGGCCATCATCCGATCAGAAGGCACAATGTCAAAAAATGCTGATAGACGTTCACTGGCATCCATAATGCTGGGAGCTCTTAGGAATTCGCCTGATTCTATGAGCATGTCAAGCTTGAGAGAATATATTGATCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGTTGGCCATGTTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTTGTGATATCCCTTTCACAGATTCTGCTGTCTTCAGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 2007 0.424 MMVLVQKPHWGLLLLFLLFQLHLHCSTCYPTEPMNCTDTSRVCTSFMAFKRGPNHTLALIESMFDVLPGDITVEGNGWGYMFIRKNCSCAAGIKKYVSNTTFTVKSNEGLVYDMVMDAYDGLAFLPNTTRMARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMDSIESVNGIGNPDNVTVGSLYYIPLDSAVPGDSYPLNNAAPPVPVLSPSFDNFSADQVNHKAHVPYGWIVGGLGVALVLIILTVILCVCLRSSNCFADTRTHEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVDQKQTDGESSNHTIMVPKASTLWPDVFDMDKPVVFTYEEIFSTTDGFSDSSLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMLEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLKSHLHDPQNKGHSPLSWIMRVQIAIDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSDGLATTKNDVYAFGVVLFEIISGKEAIIRSEGTMSKNADRRSLASIMLGALRNSPDSMSMSSLREYIDPNMMDLYPHDCVFKLAMLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0130 668 ProSitePatterns Protein kinases ATP-binding region signature. 364 385 IPR017441 GO:0005524
Gso7g0130 668 PANTHER BNAA06G02020D PROTEIN 34 668 - -
Gso7g0130 668 Pfam LysM domain 157 194 IPR018392 -
Gso7g0130 668 CDD LysM 155 199 IPR018392 -
Gso7g0130 668 SMART LysM_2 156 200 IPR018392 -
Gso7g0130 668 Gene3D Transferase(Phosphotransferase) domain 1 431 655 - -
Gso7g0130 668 Pfam Protein tyrosine and serine/threonine kinase 363 638 IPR001245 GO:0004672|GO:0006468
Gso7g0130 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Gso7g0130 668 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 34 668 IPR044812 GO:0019199|GO:0045087
Gso7g0130 668 Gene3D Phosphorylase Kinase; domain 1 335 429 - -
Gso7g0130 668 ProSiteProfiles LysM domain profile. 155 199 IPR018392 -
Gso7g0130 668 SUPERFAMILY Protein kinase-like (PK-like) 334 640 IPR011009 -
Gso7g0130 668 SMART serkin_6 358 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0130 668 SUPERFAMILY LysM domain 155 200 IPR036779 -
Gso7g0130 668 Gene3D LysM domain 152 205 IPR036779 -
Gso7g0130 668 ProSiteProfiles Protein kinase domain profile. 358 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0130 Gso-Chr7 1220285 1227109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0130 32 668 Receptor kinase-like Gene Family AT1G51940 68.527 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso7g0130 PK_Tyr_Ser-Thr 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0130 - - gmx:100797509 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0130 7 1220285 1227109 Gso7g0130 7 1220285 1227109 ECH
Gso7g0130 7 1220285 1227109 Gso8g1667 8 16323027 16330143 GST
Gso15g0182 15 1556297 1562304 Gso7g0130 7 1220285 1227109 PCT
Gso11g3630 11 51981228 51986574 Gso7g0130 7 1220285 1227109 PCT
Gso7g0130 7 1220285 1227109 Gso15g0182 15 1556297 1562304 PCT
Gso7g0130 7 1220285 1227109 Gso11g3630 11 51981228 51986574 PCT