Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0129 ATGTGGCAAAGAAGCCACAAGTCATCAGAGGAGAGGAAGCTGGAGCTTAGGCTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAAGCATCAGAAAATGCAACAGAGAAAGACGTAGAAATGAATCACCACTCACTCTTGGTTGCTTCTCAACTCAGAAAATTTTTACTTCTGACACGCCAGGTCCAGGTGGAGCTATGTTGCCCTCTGCATGGCCTTCCACATCCTATCATCACCAAGACCAGGCTAAAGCTAAAGCTTCATCATTTCTACAGCTCCAATCAAGTCCGCAAAACATGATACTGATGGGAAAGGATGTGTCACAATTCTCTTGTGTAGAGAAGAAGTCATTCTCACCCTCTTGTGCAAATCCAGCGGTGTCCAAAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCACTTCTAATTCTAAGTTGCCTTCTGGGTCCCAGCAGCAACATCAAAATGTTGTTCCAGGCAAGGTTGCTAGCCAAAAACCTACAGACAACTCAGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTCGCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAATACGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACCCTAAGCAAGACTAGCTACACCCTTGACTTGGCAATGAGAAATGAAGGATTAAGCAATTTGAGGTCTTCTTCCATGCTGAAAATTGAAGACTGA 1026 0.4464 MWQRSHKSSEERKLELRLGPPGEESLNESIRKCNRERRRNESPLTLGCFSTQKIFTSDTPGPGGAMLPSAWPSTSYHHQDQAKAKASSFLQLQSSPQNMILMGKDVSQFSCVEKKSFSPSCANPAVSKRTASGPVVGWPPIRSFRKNIASGSTSNSKLPSGSQQQHQNVVPGKVASQKPTDNSGKGLFVKINMDGVAIGRKVDINAYDSYEKLSSAVDELFRGLLAEMKLSHIASSQCCSGQRDSCAGGIQNKEQEEKSNTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLSKTSYTLDLAMRNEGLSNLRSSSMLKIED* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0129 341 MobiDBLite consensus disorder prediction 1 19 - -
Gso7g0129 341 Gene3D - 181 316 - -
Gso7g0129 341 ProSiteProfiles PB1 domain profile. 186 304 IPR000270 GO:0005515
Gso7g0129 341 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 316 - -
Gso7g0129 341 SUPERFAMILY CAD & PB1 domains 179 301 - -
Gso7g0129 341 Pfam AUX/IAA family 14 307 IPR033389 -
Gso7g0129 341 MobiDBLite consensus disorder prediction 149 181 - -
Gso7g0129 341 MobiDBLite consensus disorder prediction 1 39 - -
Gso7g0129 341 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 316 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0129 Gso-Chr7 1207565 1211087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0129 161 330 B3 DNA Binding Superfamily AT3G61830 24.118 3.36e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso7g0129 AUX_IAA 5.5e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0129 K14484 - gmx:100793822 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0129 7 1207565 1211087 Gso7g0129 7 1207565 1211087 ECH
Gso7g0129 7 1207565 1211087 Gso8g1666 8 16308908 16312104 GST
Gso15g0186 15 1588841 1592613 Gso7g0129 7 1207565 1211087 PCT
Gso11g3628 11 51942326 51946436 Gso7g0129 7 1207565 1211087 PCT
Gso7g0129 7 1207565 1211087 Gso15g0186 15 1588841 1592613 PCT
Gso7g0129 7 1207565 1211087 Gso11g3628 11 51942326 51946436 PCT