Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0117 ATGGATGGTCTTAGTTGGGATGCCTCACAACTGTGGGGTACTATTCAGCAACCACCAGTCTTTGGAGGAGGTTACTCCATGCCCCTCAATGTTCTCAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGTATTCTCAAATTCTGAAAGAGCGATTTATCAGTCCGCAGGTGCTACCACCACTTCCTCAGAGATAATGGATGTGATGCAAAAACAAGACAAAAATCTATCACAGCATGTGTCTACCATGCCGGTGAAACCAGGAGCTGGAGCCAGTTGGGGAGAAACTTTAACATCCCAATCATACCCATCCCTATCAGTCAATGGACCTCACAGTATGAACCTGATTAGCAACTACACGCCAGATTTCAACATGGCCCACCACCAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGGTTGCTCTCTTGAGCCTTTTGACTGCTTGATTTCAGCTACCAACAGCAACACAGACACTTCTGTTGAAGATGATGATGGGATCTCAATGATTTTATCTGACTGTGGAAACCTGTGGAACAACTTCAGCTATGGCAGTGTAGCTTCCACTGGTGAATCTGAGAGCAATGCTTCCAATGGTAGAAACAAAGACATGCAGTGTCCAGTCAATGAAGTTGATGAAACAGTTTCTCAAACAGTAGAATCAGAGGCTAATTGTTCAAAGAGGAGTCATGATCAATCTAAAATGATCCAAGTTGGTGATTCCTGCTTCAGTATTGTTCAGAATTCTTCTCCAATTGAAGAAGGTGGTTTCAGACTTATCTCAGATAATCCACCAGAATGCAAGAAACCCAGATGGGATATGAGTTCCTCCTCAAATAATATCAATTTCCAGCAACCAAATTCATCCATTTCTTCTTCCATTGAAGAGCCTGATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTTGGCTTGGAGGTGGTTGAAAAGCTAAAGAGGAAGAATGTGAAGATATCAACTGATCCACAAACTGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAAGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTGAAGGCACTGGAAAGTCTAGGGAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCCCTCAGTCACATCCATCATTCCTAG 1296 0.436 MDGLSWDASQLWGTIQQPPVFGGGYSMPLNVLNQIQEMQKAQTGHVFSNSERAIYQSAGATTTSSEIMDVMQKQDKNLSQHVSTMPVKPGAGASWGETLTSQSYPSLSVNGPHSMNLISNYTPDFNMAHHQQLVNGSQNGKGGCSLEPFDCLISATNSNTDTSVEDDDGISMILSDCGNLWNNFSYGSVASTGESESNASNGRNKDMQCPVNEVDETVSQTVESEANCSKRSHDQSKMIQVGDSCFSIVQNSSPIEEGGFRLISDNPPECKKPRWDMSSSSNNINFQQPNSSISSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLEVVEKLKRKNVKISTDPQTVAARHRRERISEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMQTPLSHIHHS* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0117 431 Coils Coil 377 397 - -
Gso7g0117 431 Gene3D - 340 405 IPR036638 GO:0046983
Gso7g0117 431 SMART finulus 344 393 IPR011598 GO:0046983
Gso7g0117 431 Pfam Helix-loop-helix DNA-binding domain 348 387 IPR011598 GO:0046983
Gso7g0117 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 400 IPR036638 GO:0046983
Gso7g0117 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Gso7g0117 431 PANTHER TRANSCRIPTION FACTOR BHLH87 77 425 - -
Gso7g0117 431 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 77 425 IPR045843 GO:0003700|GO:0006355
Gso7g0117 431 CDD bHLH_AtIND_like 339 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0117 Gso-Chr7 1060549 1062438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0117 90 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.036 7.83e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso7g0117 HLH 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0117 - - gmx:100793975 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0117 7 1060549 1062438 Gso7g0117 7 1060549 1062438 ECH
Gso7g0117 7 1060549 1062438 Gso8g1641 8 16040751 16042934 GST
Gso15g0197 15 1744886 1747534 Gso7g0117 7 1060549 1062438 PCT
Gso11g3616 11 51840617 51843175 Gso7g0117 7 1060549 1062438 PCT
Gso7g0117 7 1060549 1062438 Gso15g0197 15 1744886 1747534 PCT
Gso7g0117 7 1060549 1062438 Gso11g3616 11 51840617 51843175 PCT