Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0105 ATGGAAAGCAATGTTGAAGCAGAAAGCAATCATGGAAAAGTTTCTGCTTCTGCATCAACATCAAATAAGTCACCACCAATGAAGAATGATTTAATTTGCAAGTATTGTAACAAGAAGTTCAGCAATTACCAAGCCTTGGGTGGGCATCAGAATGCACACAAGGAAGAGAGAGCAGCAGCACAAAAAGAGAAGATTCTTAACATGGCTTCTGCTTATAACAAAAATTCATATGTTGGTGGGTTTGTTAATTCAAACCAATCTTATGGATTTGGTGGCAAAACATTAGGGGTGTCACCTCTATCCATGACCCGTTTTAAGCCCCATTATTATAGTAATTGGCCTCATATGTCACACGTTGCATGGCCAAGGCACCAGATTTTGAATAGTGTTCAACCCACCATTCATCAGTTGCAAACTTTGATGATGGCTGATCAAGGGAGCGGATTTTATCAGCACCACAAATCATATCAACCTTTGGCTTTTCCTATACTTAGAGAAGGAGCAGTAATAAATTCAGGGTCACAATCACAGTTATTATTAAATCCTAGTTTATGTTATAAGGGGAATAATTTTGGTCAAGCAAGCAATTCTTCAATAATACCTCAGAATAAAATCATAGAGGGTTCTGATGATTTGAATATCAAGATTTCTGGTGAAGCAAAAAACAGTTTTTCTTCAATGCCTTCCAATGGAGACGTGAAGGAGCTTGATTTGACTCTCAAAATTTGA 729 0.3745 MESNVEAESNHGKVSASASTSNKSPPMKNDLICKYCNKKFSNYQALGGHQNAHKEERAAAQKEKILNMASAYNKNSYVGGFVNSNQSYGFGGKTLGVSPLSMTRFKPHYYSNWPHMSHVAWPRHQILNSVQPTIHQLQTLMMADQGSGFYQHHKSYQPLAFPILREGAVINSGSQSQLLLNPSLCYKGNNFGQASNSSIIPQNKIIEGSDDLNIKISGEAKNSFSSMPSNGDVKELDLTLKI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0105 242 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Gso7g0105 242 Gene3D Classic Zinc Finger 16 85 - -
Gso7g0105 242 MobiDBLite consensus disorder prediction 1 25 - -
Gso7g0105 242 PANTHER ZINC FINGER PROTEIN JAGGED 16 241 IPR045320 GO:0003700
Gso7g0105 242 SUPERFAMILY beta-beta-alpha zinc fingers 31 58 IPR036236 -
Gso7g0105 242 PANTHER ZINC FINGER PROTEIN KNUCKLES 16 241 - -
Gso7g0105 242 Pfam C2H2-type zinc finger 32 55 - -
Gso7g0105 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0105 Gso-Chr7 955921 956649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0105 33 242 C2H2 Transcription Factor Family AT5G10970 26.168 1.17e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g0105 zf-C2H2_6 6.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0105 - - gmx:102668090 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0105 7 955921 956649 Gso8g1623 8 15868011 15868745 GST