Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0089 ATGAGCCGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAGCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGGAGGGATTATGATGATGGTGGGTCACCAAAGAGGAACCTCAGTTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTACGTTGAGTCACCAGCTGTAAGGGCAATGACAGATGCTGAAGTTAATGAGTACCGGCAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCGAAACCTGTCAAGTCCTTTCATGATGCTGGTTTTCCAGAATATGTAATGGAAGAAATTACAAAAGCTGGCTTTACTGAACCTACGCCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCATCCATTGTGCATGTTAATGCTCAGCCTATTCTAAATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCAGGAAGGTTAATTGATATGCTTGAGTCAAATCATACCAACTTGCAGAGGGTCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTACGGAAGATTGTCTCCCAGATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTAAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTTATGGATACCAAAAAAGGATGTGATCAAATCACTAGGCAACTCCGCATGGATGGATGGCCTGCACTCTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGCAAAAGTCCTATTATGACGGCAACAGATGTTGCAGCCCGTGGTCTAGATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGATTATGTTCATCGCATTGGGCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACATACTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAGCCATACTCGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGA 1524 0.4521 MSRYDSRSGDPTSYRDRRSDSGLGAPTGFGGSVQHSSSNRRDYDDGGSPKRNLSLDGLPHFEKNFYVESPAVRAMTDAEVNEYRQQREITVEGRDIPKPVKSFHDAGFPEYVMEEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPSIVHVNAQPILNPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTYFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPPPSGPRGFQDRGRGYGSSRPWS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0089 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 480 IPR001650 -
Gso7g0089 507 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 253 261 IPR000629 -
Gso7g0089 507 PANTHER LD32873P 56 495 - -
Gso7g0089 507 Gene3D - 64 308 IPR027417 -
Gso7g0089 507 Pfam DEAD/DEAH box helicase 125 296 IPR011545 GO:0003676|GO:0005524
Gso7g0089 507 SMART helicmild6 360 441 IPR001650 -
Gso7g0089 507 CDD DEADc_DDX5_DDX17 112 307 - -
Gso7g0089 507 MobiDBLite consensus disorder prediction 475 507 - -
Gso7g0089 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 456 IPR027417 -
Gso7g0089 507 MobiDBLite consensus disorder prediction 1 56 - -
Gso7g0089 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 101 129 IPR014014 GO:0003724
Gso7g0089 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 307 IPR014001 -
Gso7g0089 507 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 56 495 - -
Gso7g0089 507 SMART ultradead3 120 323 IPR014001 -
Gso7g0089 507 MobiDBLite consensus disorder prediction 1 17 - -
Gso7g0089 507 Pfam Helicase conserved C-terminal domain 332 441 IPR001650 -
Gso7g0089 507 CDD SF2_C_DEAD 320 450 - -
Gso7g0089 507 Gene3D - 309 481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0089 Gso-Chr7 803538 809552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0089 88 461 Eukaryotic Initiation Factors Gene Family AT3G19760 33.867 1.89e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0089 K12823 - gmx:100790464 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0089 7 803538 809552 Gso8g1603 8 15695417 15701862 GST