Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0078 ATGGAGATGAAGGGTTTTATGTTCTACCAACAACAGCAACAGCAACAAATAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGCTACATGGCTCCACCACCAACTCAGATTCAACCACCAAAGAAAAAAAGAAACCTCCCTGGCAATCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTTCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCAAGTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTGGCAGAGGAGAGTGCAAGAGCCATCGCAAACCCACTTCTTCCCCCACAACAACAACAATCTTCTTCCTCTCACATGAGTACTCTCCAAACCCAATTCAACCCTCAAAACCTCCATGCCTTCCCATTGAAAAAAGAAATGCCCCCTTGGCTTGGCCCACCAGCAACAGTAGTTGTTGATCATCATCTGTCTTCATCCTCATCCATAATGTTCTCTCCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAATCCACACATGTCAGCCACTGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCACACCAGCCATGACTGGGCCCCACCATCATGCTCACGTGTCTCATTTTGGCTTGAACTTGTCCTCACGTGAAGACACCACCACCACCACCCCTTCAACAACAACTACTAATGCTAACACTGCTACAGTGTTCAGCCATGGCTTATTATCATCATCACCATTGGGGAATAAAGCTGCTGCTGCTGCTGCTGTGTCTTCTTCCGCACCATCCCTTCTTCACGATGTTATCAACTCTTTCTCTTCTCCTTCTGCCTTTGAAGGAACCCCTTTTGAGGATGCATTCATTCAGAGCTCAAAGAAACTAGATGATGATCATAACTTGTATTTGCATGACACATTCTCAAAAACAAGTGGTGCAGCTGGGAATAATATTAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATGCTGATATTCTCACCATCGCTGGCATTGGAAATTGCATCCATGATCAGCAGAACCAGTCTCAAAAGCCATGGCAAGGTTAG 1497 0.4689 MEMKGFMFYQQQQQQQIVEENMSNLTSASGEASASSGNRTEIGTSYMAPPPTQIQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAIANPLLPPQQQQSSSSHMSTLQTQFNPQNLHAFPLKKEMPPWLGPPATVVVDHHLSSSSSIMFSPPHQENPNPSLGPTLAAYQTVPNPHMSATALLQKAAQMGATMSRSGSTPAMTGPHHHAHVSHFGLNLSSREDTTTTTPSTTTTNANTATVFSHGLLSSSPLGNKAAAAAAVSSSAPSLLHDVINSFSSPSAFEGTPFEDAFIQSSKKLDDDHNLYLHDTFSKTSGAAGNNINEGLTRDFLGLRPLSHADILTIAGIGNCIHDQQNQSQKPWQG* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0078 498 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Gso7g0078 498 Gene3D Classic Zinc Finger 141 221 - -
Gso7g0078 498 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 483 - -
Gso7g0078 498 MobiDBLite consensus disorder prediction 320 370 - -
Gso7g0078 498 Pfam Zinc-finger double-stranded RNA-binding 87 109 IPR022755 -
Gso7g0078 498 MobiDBLite consensus disorder prediction 351 370 - -
Gso7g0078 498 MobiDBLite consensus disorder prediction 11 49 - -
Gso7g0078 498 MobiDBLite consensus disorder prediction 320 335 - -
Gso7g0078 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Gso7g0078 498 MobiDBLite consensus disorder prediction 11 71 - -
Gso7g0078 498 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Gso7g0078 498 Gene3D Classic Zinc Finger 68 134 - -
Gso7g0078 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 483 - -
Gso7g0078 498 SMART c2h2final6 128 158 IPR013087 -
Gso7g0078 498 SMART c2h2final6 163 183 IPR013087 -
Gso7g0078 498 SMART c2h2final6 87 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0078 Gso-Chr7 681893 685319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0078 22 498 IDZ Gene Family AT3G13810 46.416 3.84e-133 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso7g0078 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0078 K25870 - gmx:100785687 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0078 7 681893 685319 Gso8g1591 8 15561207 15564814 GST
Gso15g0218 15 1986255 1989332 Gso7g0078 7 681893 685319 PCT
Gso11g3590 11 51603759 51606694 Gso7g0078 7 681893 685319 PCT
Gso7g0078 7 681893 685319 Gso15g0218 15 1986255 1989332 PCT
Gso7g0078 7 681893 685319 Gso11g3590 11 51603759 51606694 PCT