Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0060 ATGGCAGGTTTGGCTCCAGAAGGAACACAATTTGATGGTCGCCAATATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCATATGACGAAGTCTATGACAGCTTTGATGCCATGGGATTGCAAGAGAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTGGGAGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTTAAGGATCAGATCTATGACATCTTTCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGAAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATCAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTGGAGACATTATGCGACCTTTATGAGACTCTGGCTATCACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGATCACACAGTCTCTGCCACCCACGGTGACATGGACCAAAATACCCGTGATATCATCATGCGTGAATTCCGGTCCGGCTCTTCCCGAGTTCTCATTACCACTGACCTTCTTGCCCGTGGAATTGATGTGCAGCAGGTGTCTCTGGTCATAAATTATGATCTGCCAACCCAACCTGAAAACTATCTCCACCGCATAGGGCGTAGTGGTCGGTTTGGAAGAAAAGGAGTTTCTATAAACTTTGTCACGATGGATGATGCCAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTACTCTGA 1242 0.4614 MAGLAPEGTQFDGRQYDAKMSELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTMDDARMLSDIQKFYNVTVEELPSNVADLL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0060 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Gso7g0060 413 Gene3D - 249 413 IPR027417 -
Gso7g0060 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Gso7g0060 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Gso7g0060 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Gso7g0060 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Gso7g0060 413 Gene3D - 30 248 IPR027417 -
Gso7g0060 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Gso7g0060 413 SMART helicmild6 293 374 IPR001650 -
Gso7g0060 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Gso7g0060 413 PANTHER RNA HELICASE 23 413 - -
Gso7g0060 413 SMART ultradead3 59 256 IPR014001 -
Gso7g0060 413 CDD SF2_C_DEAD 253 383 - -
Gso7g0060 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Gso7g0060 413 CDD DEADc_EIF4A 44 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0060 Gso-Chr7 550713 554015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0060 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 88.889 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0060 K03257 - gmx:100809918 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0060 7 550713 554015 Gso7g0060 7 550713 554015 ECH
Gso7g0060 7 550713 554015 Gso8g1575 8 15363642 15366956 GST
Gso15g0232 15 2119286 2122760 Gso7g0060 7 550713 554015 PCT
Gso11g3575 11 51478627 51481732 Gso7g0060 7 550713 554015 PCT
Gso7g0060 7 550713 554015 Gso15g0232 15 2119286 2122760 PCT
Gso7g0060 7 550713 554015 Gso11g3575 11 51478627 51481732 PCT