Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0058 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCTCTCATAGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAAGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCCTAAAGCCTTCTCTGCTCCTCCTGCTACTACCGCCACCACCGCCACTCCTCAGAACGCTTCTCCTGCTCCTCAAAGCGCATCGTCTGATGCTGCTGTTGCCCCTGACGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCATTGATTTTTGAAGCTCTATCAGCACTGAAAGATAGTAATGGATCCGACATGAATGCCATTATTAAATTCATGGAGCAAAAAAATCATCAGGTAAACCAAAATTTTAAAAGGGCATTAAGTACACGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACCAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAGTCACCTTCACCAAAAGCAAAGGATGTCCGGCCTCCACAACCACAACGGCAATCTCCAGCTTCTCTCTTTATGACTAATGACACATTAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA 858 0.458 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKPKAFSAPPATTATTATPQNASPAPQSASSDAAVAPDASQNDQDAKNPPRYNALIFEALSALKDSNGSDMNAIIKFMEQKNHQVNQNFKRALSTRLRRLVSQGKLEKVPNGYKVKKEASSGTKSPSPKAKDVRPPQPQRQSPASLFMTNDTLKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0058 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Gso7g0058 285 Gene3D - 115 207 IPR036388 -
Gso7g0058 285 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Gso7g0058 285 MobiDBLite consensus disorder prediction 80 119 - -
Gso7g0058 285 Gene3D - 8 80 - -
Gso7g0058 285 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Gso7g0058 285 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 284 - -
Gso7g0058 285 SMART h15plus2 117 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso7g0058 285 Pfam linker histone H1 and H5 family 121 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso7g0058 285 MobiDBLite consensus disorder prediction 58 121 - -
Gso7g0058 285 SMART sant 4 59 IPR001005 -
Gso7g0058 285 MobiDBLite consensus disorder prediction 175 219 - -
Gso7g0058 285 SUPERFAMILY "Winged helix" DNA-binding domain 118 199 IPR036390 -
Gso7g0058 285 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gso7g0058 285 PANTHER SINGLE MYB HISTONE 4 1 284 IPR044597 GO:0003691
Gso7g0058 285 CDD SANT_TRF 6 56 - -
Gso7g0058 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0058 Gso-Chr7 537413 541641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0058 1 285 Single Myb Histone (SMH) Gene Family AT1G72740 45.965 6.88e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso7g0058 Linker_histone 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0058 K09422 - gmx:780537 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0058 7 537413 541641 Gso8g1573 8 15351248 15356734 GST