Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0040 ATGTCGGCGCCGGCGGAGGCTCCTTCCTTCACTGCCTCTCCTCCGTCAGAGACTACTCCCTCACCTAACTCCACTGCCCTCTCTCCTCCGCCTCCCTCCACCATCAATGCCACCGTTTCTCCTCCGCCGCCGGAGGCGGCCTCCCCTCCGACCAGTACCGTTAACAGCGGGTTGTCGACGGGTACAGTGAGCGGAATAGTTATAGGGGCCGTGTTAGGTTCGGTGGGTATGCTTATCATTGGGGGCATTTTCTTCTGCTTCTATAGGAATTGGAAAAGGAAGAAGAACCACTCGCAGCCGCCACAACCAAAAGCTGACATAGCTGGTGGCACACTTCAGAATTGGCAGGACAGTGTTCCTCCAACAACAGATGGTAAAGTGGGCTTCTCACCCAAGCCTCCTCCTGGGGGTTTAGTGAATCAGCAACAGTCATCCGCTGCTCTCCTCACACTTGTTGTCAATTCTTCGAACACCAGCAGCAGTTTGGGGTCCGAGAAGGCGAAGTCATACATTTCTCCATCTCCTGGCACTTCCTTGGCACTATCTCAAAGCACTTTTACGTATGACGAATTATCTATGGCGACAGATGGATTCTCCAGATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCATAAAGGAGTTCTCCCAAATGGGAAAATTGTCGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAAGTTGATGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTAGTTGGATACTGCGTCTCAGACAGCCAAAAGATGCTTGTCTACGAGTATGTGGAAAATGATACACTAGAATTTCACTTGCATGGAAAGGACAGACTACCTATGGATTGGTCAACAAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATATTTGCATGAAGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTCTTGATGAAAGTTTTGAGGCTAAGGTCGCAGATTTTGGACTTGCAAAATTTTCATCAGACACAGACACCCATGTTTCTACCCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTCACTGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACTGGACGAAAACCTGTTGATAAAACTCAAACCTTCATAGATGACAGCATGGTTGAATGGGCGAGGCCTTTACTATCCCAAGCTTTGGAAAATGGCAACTTAAATGGACTTGTCGATCCAAGGTTGCAGACAAATTACAATCTTGACGAGATGATCCGAATGACTACTTGTGCTGCAACTTGTGTGCGCTATTCAGCCAGGCTCCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGATGGGATTGCACCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGAGTTCTAGTTATGACAGTGTCCAATACAGAGAAGACCTAAAGAACTTTAAGAAGCTGGCACTGGAAAGCCAAGAGCAAGGCATTAGTGAGTACAGTGGTCCCAGCAGCGAGTATGGCCGACATCCATCTGTCTCAACTAGTTCGGACCAGCAAAATACGCAGGAAATGGAAATGGGGAACAAGAAGGGTAGCAACCATGATTCTGGGATACAAGTTCTTGATTGA 1713 0.4711 MSAPAEAPSFTASPPSETTPSPNSTALSPPPPSTINATVSPPPPEAASPPTSTVNSGLSTGTVSGIVIGAVLGSVGMLIIGGIFFCFYRNWKRKKNHSQPPQPKADIAGGTLQNWQDSVPPTTDGKVGFSPKPPPGGLVNQQQSSAALLTLVVNSSNTSSSLGSEKAKSYISPSPGTSLALSQSTFTYDELSMATDGFSRSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVDVISRVHHRHLVSLVGYCVSDSQKMLVYEYVENDTLEFHLHGKDRLPMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILLDESFEAKVADFGLAKFSSDTDTHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTQTFIDDSMVEWARPLLSQALENGNLNGLVDPRLQTNYNLDEMIRMTTCAATCVRYSARLRPRMSQVVRALEGNISLEDLNDGIAPGHSRVFGSFESSSYDSVQYREDLKNFKKLALESQEQGISEYSGPSSEYGRHPSVSTSSDQQNTQEMEMGNKKGSNHDSGIQVLD* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0040 570 SMART serkin_6 198 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0040 570 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524
Gso7g0040 570 ProSiteProfiles Protein kinase domain profile. 198 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0040 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Gso7g0040 570 SUPERFAMILY Protein kinase-like (PK-like) 171 471 IPR011009 -
Gso7g0040 570 Pfam Protein tyrosine and serine/threonine kinase 201 471 IPR001245 GO:0004672|GO:0006468
Gso7g0040 570 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 546 - -
Gso7g0040 570 MobiDBLite consensus disorder prediction 1 23 - -
Gso7g0040 570 MobiDBLite consensus disorder prediction 523 570 - -
Gso7g0040 570 MobiDBLite consensus disorder prediction 1 56 - -
Gso7g0040 570 Gene3D Transferase(Phosphotransferase) domain 1 274 482 - -
Gso7g0040 570 Gene3D Phosphorylase Kinase; domain 1 160 273 - -
Gso7g0040 570 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 6 546 - -
Gso7g0040 570 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0040 Gso-Chr7 365045 370596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0040 23 529 Trihelix Transcription Factor Family AT1G70460 48.679 1.50e-154 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso7g0040 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0040 - - gmx:100788350 1083.55