Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0039 ATGGCTTCAGCTCCATCATCGCCAGAAACTCCTCCCAACACAAACTTCACTGCCACCTCTACTCCTCCACTCAAGACTTCTCCCGCAACTCTTCCCAATCCCAATAACAAACGCTTGCTGATCGGATTATCTATAGGGTTTGCCCTTTTATCTTTTGTTTTGATCCTTGTGATTGCCTTTCTCGTCTACTTCCTTCATCGGGTAAGGAAAAATAAACGACATAAGAGCTTCGGGAGAATACCACTTCAAGATGACATGCCTGGTGGCACACTTCAGCTTCAGCCACAGCAACAATCACCCGCTGTTCTCACCAGAATCGTTATTAGTTGCAGAGAATTTTCACGTGAGGAATTACATGTGGCAACAGATGGATTCTCCAACATTCTTGGTGAAGGTGGTTTTGGCCGTGTCTACAAAGGACGTCTCCCAAATGGGAAATTTGTTGCAGTTAAGAAATTGGAGTCTGGGAGTCAACAGGGTGATCGTGAGTTCCAGGCAGAAGTCGAGGCCATCAGCCGTGTGAATCACAGATATCTCGTAACCCTAGTTGGGTACTGCACCTCAGACGATGAGAGGATGCTTGTCTACGAGTTTGTGCCAAATAATACACTAAAATTTCATTTGCATGAAAAGGACAAACCATCGATGGACTGGTCAACAAGGATGAAGATTGCTCTAGGATCTGCAAAAGGATTTGAATATCTGCATGTGTACTGTGATCCCATAATCATACACCGTGACATCAAGGCATCCAACATCCTTCTTGATAAAGATTTTGAGCCCAAGGTTGCAGACTTTGGACTTGCAAAATTTTTATCAGACACAGAAAGCCATGTTTCTACTCGAGTGATGGGAACTGATGGATACGTGGATCCAGAATATCGTGATAGTGGGAGACTCACTGCAAAATCAGATGTTTACTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACTGGACGAAAACCTATTGATGAAAAGAAACCCTTCAAAGAGCGCGACTTGGTTAAATGGGCAAGTCCCTTCCTGCTCCAAGCTTTGAGAAATATCACCGTTGTACCTCTTGATTCAAGGTTGCAGGAAACTTACAATCCTGAGGAGTTCCTCTGCCAAGCTTTGAAAAATGGCAGGTTTGATGGACTTATTGATTCAAGGTTGCAGGAAACTAATTACAATCCTGAGGAGATGATCCGAATGATCACTTGTGCTGCAGCTTGTGTGCTTAACTCAGCCGAGCTCCGGCCTCAAATGAGCCTGGTTGTTCTAGCTCTGGGAGGATTTATTCCTCTAAAATTTCTAAAGCCGGAGATCACACCTGGAACCAGCAATGTTTCTGAATACTTAAGTGATAGTATCCAATCCTATGAAGACCTAAAGAAGATATTCATGAATATGGCACAGAAAGGCAGAGAGAATGTCATTGATGAGAATGAGTACAGTGATCCCAGAAGCAAGTACGGTCAAGATCAATGTGCGTCGTCTATGGCTGGACCCAGCAATGTTTCTGATTCCTTTAATAATGGTGTCCAATCCATGAATATGGAACAGAAAGACAAAGAGAAGGTTATTAATGAGAACATTGATCCCAGCAGCAAGTATGATTCTGTGTCTACTCACGGCCAGCAAAATACAAAAGAAATGGGGAAGGTGAACGGTTCGTAG 1659 0.4346 MASAPSSPETPPNTNFTATSTPPLKTSPATLPNPNNKRLLIGLSIGFALLSFVLILVIAFLVYFLHRVRKNKRHKSFGRIPLQDDMPGGTLQLQPQQQSPAVLTRIVISCREFSREELHVATDGFSNILGEGGFGRVYKGRLPNGKFVAVKKLESGSQQGDREFQAEVEAISRVNHRYLVTLVGYCTSDDERMLVYEFVPNNTLKFHLHEKDKPSMDWSTRMKIALGSAKGFEYLHVYCDPIIIHRDIKASNILLDKDFEPKVADFGLAKFLSDTESHVSTRVMGTDGYVDPEYRDSGRLTAKSDVYSFGVVLLELITGRKPIDEKKPFKERDLVKWASPFLLQALRNITVVPLDSRLQETYNPEEFLCQALKNGRFDGLIDSRLQETNYNPEEMIRMITCAAACVLNSAELRPQMSLVVLALGGFIPLKFLKPEITPGTSNVSEYLSDSIQSYEDLKKIFMNMAQKGRENVIDENEYSDPRSKYGQDQCASSMAGPSNVSDSFNNGVQSMNMEQKDKEKVINENIDPSSKYDSVSTHGQQNTKEMGKVNGS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0039 552 SMART serkin_6 123 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0039 552 Pfam Protein kinase domain 127 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0039 552 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK15 365 472 - -
Gso7g0039 552 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK15 3 367 - -
Gso7g0039 552 MobiDBLite consensus disorder prediction 527 552 - -
Gso7g0039 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gso7g0039 552 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 365 472 - -
Gso7g0039 552 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 367 - -
Gso7g0039 552 MobiDBLite consensus disorder prediction 477 552 - -
Gso7g0039 552 SUPERFAMILY Protein kinase-like (PK-like) 100 421 IPR011009 -
Gso7g0039 552 ProSiteProfiles Protein kinase domain profile. 123 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g0039 552 MobiDBLite consensus disorder prediction 1 31 - -
Gso7g0039 552 MobiDBLite consensus disorder prediction 483 512 - -
Gso7g0039 552 Gene3D Phosphorylase Kinase; domain 1 96 198 - -
Gso7g0039 552 Gene3D Transferase(Phosphotransferase) domain 1 199 428 - -
Gso7g0039 552 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0039 Gso-Chr7 354816 360400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0039 2 423 Trihelix Transcription Factor Family AT1G70460 45.806 9.59e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso7g0039 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0039 - - gmx:100778189 1075.46