Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0023 ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAACAAAGTCTCTGAAGATGGTTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTATTTGTATTCTGGAATCCCTGAAGCAGCCGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGTATGTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTAGTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGTGATATGTTTGAGCAGCCTGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAAGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA 1047 0.4422 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTHVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0023 348 SUPERFAMILY Ubiquitin-like 1 87 IPR029071 -
Gso7g0023 348 TIGRFAM rad23: UV excision repair protein Rad23 1 347 IPR004806 GO:0006289
Gso7g0023 348 Gene3D - 126 176 - -
Gso7g0023 348 CDD UBA1_Rad23_plant 127 176 - -
Gso7g0023 348 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 347 - -
Gso7g0023 348 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gso7g0023 348 PRINTS DNA repair protein Rad23 signature 249 271 IPR004806 GO:0006289
Gso7g0023 348 PRINTS DNA repair protein Rad23 signature 298 314 IPR004806 GO:0006289
Gso7g0023 348 PRINTS DNA repair protein Rad23 signature 315 329 IPR004806 GO:0006289
Gso7g0023 348 PRINTS DNA repair protein Rad23 signature 330 345 IPR004806 GO:0006289
Gso7g0023 348 SUPERFAMILY UBA-like 282 345 IPR009060 GO:0005515
Gso7g0023 348 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 131 174 IPR015940 -
Gso7g0023 348 SUPERFAMILY XPC-binding domain 220 286 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso7g0023 348 Gene3D - 295 343 - -
Gso7g0023 348 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gso7g0023 348 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 302 342 IPR015940 -
Gso7g0023 348 Pfam XPC-binding domain 223 278 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gso7g0023 348 SMART ubq_7 1 75 IPR000626 GO:0005515
Gso7g0023 348 MobiDBLite consensus disorder prediction 82 111 - -
Gso7g0023 348 SMART uba_6 304 341 IPR015940 -
Gso7g0023 348 SMART uba_6 133 173 IPR015940 -
Gso7g0023 348 SUPERFAMILY UBA-like 130 181 IPR009060 GO:0005515
Gso7g0023 348 SMART CBM 221 264 IPR006636 -
Gso7g0023 348 Gene3D - 1 80 - -
Gso7g0023 348 Gene3D - 213 279 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso7g0023 348 CDD Ubl_Rad23 1 74 - -
Gso7g0023 348 Pfam UBA/TS-N domain 133 171 IPR015940 -
Gso7g0023 348 Pfam UBA/TS-N domain 304 339 IPR015940 -
Gso7g0023 348 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0023 Gso-Chr7 219158 225566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0023 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 9.73e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0023 K10839 - gmx:100778187 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0023 7 219158 225566 Gso7g0023 7 219158 225566 ECH