Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2651 ATGAATGTGACAAACAAACCAAACCCATATGGTTCCACCAATGGGTTTCAGTCTCAGCTTCAACAAAATGGGTGGGAACAGGGATCATCTAGACTCAGACCCACTAAGCTTTACCCTGCACCAACGGCTCGCTACCAGGACATTGTTCGTGATGCAAACCTCTTCTGGGGAACGCTTCAAGCTTTTCACAAAACACTTGGCACCAAATATAAGATTTCTACTGTGGGAGGAACGCCACTTGATCTACATCGTCTTTTTGTCGAAGTTACATCTCGCGGTGGGATTGAAAAGGTGATTGTTGATCGTAAGTGGAAGGAAGTGATTCTGACCTTCAATTTCAAAGATACCATAACCAATGCATCATTTATGGTGCGCAAATCCTACCTCTCGATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCACAACACCTGATCTTATGATTAGAGGCCAATCATGCCAACCCTATAGCTCCACAACCATTCCAGAAGTTGCTGCTGTGAATGATTCACCTGTTCAGAGTACTCCAGTACAGGCACATGATGATATGGTTTCTGGAACAATTGATGCGAAATTTGATGTTGGATATGTAGTTACAGTGACTCTAGGTTCTGAGCAGCTGCAAGGTGTCCTGTTTCATGTTCCTGATAACGTGTCCCAGAGTTCTCATGCCGAAGGCACATCTAGTTCACAGAATCTTGGTGATGACACGTCTAATTTACAGAGTCGAAAGAGAGCAAAATATGCACCACGTGATCCATTTCGGCCAAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAAAATTATGCCAGGCTGAAGCCCTCGTATCATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGATAAGAGATAAGGAAAGATACAGGACTGAACTGATGGAGTACAAATCCAATAATTCAACTCCAAATGCTCAATAG 1020 0.4324 MNVTNKPNPYGSTNGFQSQLQQNGWEQGSSRLRPTKLYPAPTARYQDIVRDANLFWGTLQAFHKTLGTKYKISTVGGTPLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITNASFMVRKSYLSMLYHFEQVYYFGRQGIPPTTPDLMIRGQSCQPYSSTTIPEVAAVNDSPVQSTPVQAHDDMVSGTIDAKFDVGYVVTVTLGSEQLQGVLFHVPDNVSQSSHAEGTSSSQNLGDDTSNLQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGIRDKERYRTELMEYKSNNSTPNAQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2651 339 SMART hmgende2 262 331 IPR009071 -
Gso6g2651 339 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g2651 339 Pfam HMG (high mobility group) box 263 330 IPR009071 -
Gso6g2651 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 26 338 - -
Gso6g2651 339 SUPERFAMILY ARID-like 48 149 IPR036431 GO:0003677
Gso6g2651 339 CDD ARID_HMGB9-like 51 136 IPR045303 GO:0003677
Gso6g2651 339 MobiDBLite consensus disorder prediction 1 33 - -
Gso6g2651 339 MobiDBLite consensus disorder prediction 226 264 - -
Gso6g2651 339 SMART ARID_2 46 136 - -
Gso6g2651 339 MobiDBLite consensus disorder prediction 247 261 - -
Gso6g2651 339 Gene3D High mobility group box domain 246 338 IPR036910 -
Gso6g2651 339 Pfam ARID/BRIGHT DNA binding domain 53 136 IPR001606 GO:0003677
Gso6g2651 339 CDD HMGB-UBF_HMG-box 263 326 - -
Gso6g2651 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 26 338 - -
Gso6g2651 339 MobiDBLite consensus disorder prediction 226 246 - -
Gso6g2651 339 Gene3D - 42 146 IPR036431 GO:0003677
Gso6g2651 339 ProSiteProfiles ARID domain profile. 49 140 IPR001606 GO:0003677
Gso6g2651 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 330 IPR009071 -
Gso6g2651 339 SUPERFAMILY HMG-box 262 333 IPR036910 -
Gso6g2651 339 SMART bright_3 50 141 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2651 Gso-Chr6 48312723 48317542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2651 43 335 ARID Transcription Factor Family AT3G13350 48.322 1.06e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso6g2651 ARID 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2651 - - gmx:100789037 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0956 4 11796833 11801784 Gso6g2651 6 48312723 48317542 GST