Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2642 ATGGCTGGGATTGATGATAATGTTGCCCTTACTGGTGATTGGGGTCTTGCTAGCCCAAGTCCAAGGACCTTTTTTTCCAGAATGTTAGAAGAAGATAGTGTGACAAGATCAATCTCAGAACATTCTGGAAGTGGTAGAACTGGGGATCCCTTTTCGGGACATCGCGAGCCTAGTGAGATGAGGAAAGAAAACATGAAAGATAGGGCACAGGATGGTGATTCTGGAGCCCAATTGACTGACGTGAGTTTTCAGACCGAGCAGAAGCCGAGCTCTCGGGGTGGTCTTGTTGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCGAGGTTGAATACAGAAAGCATTAGATCTACTGACCTTTCACTTAATTCCGACATTCAGTCTCCTTACTTGACCATCCCACCTGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACCGGAAAGTTCCTGTTCATGGTTAATGGCAACATGCGGCACTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAACACAATGGCTTTGATGATATCTACACATCATCCTTTGCTTTCAAGCCTGCAACAGATTCAGGCTCCTCTTTTTATCATGGTGCTGGAAGAAAAATAAATCCAACTACACTTCCTCAACAATCCCTTCCTGGTGTTGAGGTTTCGGCTCAGTCTGAAAATTCTTTTCAATGTCAAAGTGTTGATGCTGTCAAAGCTCAAACTGAGAACAAAAGTGGCCTTCATCTTCAGGAAGACTTTGTTGAATCGCCTCCTCAAAAAGATAATGGAATTAAAATGTTCTCAGCCAATCAAAGGGCTTTTGATGCTGTTGGCAGTGGCATTGAACATTCTACACCAGTTGAAGAGCAAGCAGATGAAGAAGGAGATCAACGAGTCAATGGAGATTCAATGGCTGGTGGTGTTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTGAAGGGCAGCGAGTACCCACGGAGTTACTACAAGTGTACTCATCCGAACTGTCAGGTTAAGAAGAAAGTAGAACGATCTCATGAGGGCCACATAACTGAGATCATCTACAAGGGAACGCACAACCATGCAAAACCTCCTCCAAATCGCCGGTCAAGTATAGGTTCGGTTAACCTTCATACTGACATGCAAGTGGACAACCCTGAACACGTTGAACCACACAATGGTGGTGATGGTGACTTGGGCTGGGCTAATGTACAAAAGGGAAATATAGCTGGAGCTGCTAATTGGAAGCATGAAAACATTGAAGCCACATCATCAGCATCTGTTGGCCCTGAATACTGCAACCAGTCCCCCAATTTGCAGGCTCAAAATGGTACTCACTTAGATTCAGGAGAGGCGGTGGATGCCTCATCTACTTTTTCTAATGAAGAAGACGATCAAGTCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCTGAGTCTAAGAGAAGGAAACTGGAATCATATGCAGAGTTGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACGAATGCAGGGTGCACGGTCAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTAATCACAACATACGAGGGAAAACATAACCATGATGTTCCTGCTGCTCGTGCCAGCAGTCACGTCAACGCTAATGCTTCCAATGCCGTTCCTGGCCAAGCTGCTCTTCAGACTCATGTTCATAGACCCGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTTGAGAGGCCTTCTCTTGGCTCATTCAACCTACCCGGGAGGCAGCAACTAGGACCATCCCATGGCTTCTCCTTTGGTATGAACCAATCCATGCTATCAAATCTGGTGATGTCAGGGTTAGGCCACGCGCAAGCAAAGCTTCCTGTCATGCCTGTTCATCCGTTCTTGGCAGCGCAACAACAACATCAACAGCGACAACAACATCAACAGCAGCAGCAACATCAACAGCAGCAGCAACAACATCAACAGCAACAGCAACATCAACAACAACAATGCGCTGCAAATGATTTGGGTTTCATGTTGCCAAAGGGAGAGCCAAATGTGGAGGCTATTCCTGAACATGGTGGCCTTAACCTGTCAAATGGCTCATCAGTGTACCAAGAAATGATGAGTCGCATGCCTCTTGGACCTCATATGTAA 2331 0.4565 MAGIDDNVALTGDWGLASPSPRTFFSRMLEEDSVTRSISEHSGSGRTGDPFSGHREPSEMRKENMKDRAQDGDSGAQLTDVSFQTEQKPSSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMVNGNMRHSELSSDAPEKCKHNGFDDIYTSSFAFKPATDSGSSFYHGAGRKINPTTLPQQSLPGVEVSAQSENSFQCQSVDAVKAQTENKSGLHLQEDFVESPPQKDNGIKMFSANQRAFDAVGSGIEHSTPVEEQADEEGDQRVNGDSMAGGVGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHAKPPPNRRSSIGSVNLHTDMQVDNPEHVEPHNGGDGDLGWANVQKGNIAGAANWKHENIEATSSASVGPEYCNQSPNLQAQNGTHLDSGEAVDASSTFSNEEDDQVTHGSVSLGYDGEGDESESKRRKLESYAELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNAVPGQAALQTHVHRPEPSQVHNGIGRLERPSLGSFNLPGRQQLGPSHGFSFGMNQSMLSNLVMSGLGHAQAKLPVMPVHPFLAAQQQHQQRQQHQQQQQHQQQQQQHQQQQQHQQQQCAANDLGFMLPKGEPNVEAIPEHGGLNLSNGSSVYQEMMSRMPLGPHM* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2642 776 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 106 671 - -
Gso6g2642 776 MobiDBLite consensus disorder prediction 444 486 - -
Gso6g2642 776 SUPERFAMILY WRKY DNA-binding domain 322 382 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 MobiDBLite consensus disorder prediction 75 91 - -
Gso6g2642 776 Gene3D WRKY domain 524 590 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 ProSiteProfiles WRKY domain profile. 532 597 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 Pfam WRKY DNA -binding domain 324 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 Pfam WRKY DNA -binding domain 538 594 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 MobiDBLite consensus disorder prediction 444 506 - -
Gso6g2642 776 ProSiteProfiles WRKY domain profile. 324 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 SMART WRKY_cls 323 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 SMART WRKY_cls 537 596 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 SUPERFAMILY WRKY DNA-binding domain 529 597 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 MobiDBLite consensus disorder prediction 295 328 - -
Gso6g2642 776 Coils Coil 695 715 - -
Gso6g2642 776 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 671 IPR044810 GO:0003700
Gso6g2642 776 MobiDBLite consensus disorder prediction 694 759 - -
Gso6g2642 776 Gene3D WRKY domain 318 383 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g2642 776 MobiDBLite consensus disorder prediction 694 732 - -
Gso6g2642 776 MobiDBLite consensus disorder prediction 52 70 - -
Gso6g2642 776 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2642 Gso-Chr6 48226455 48231300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2642 1 771 WRKY Transcription Factor Family AT5G56270 47.000 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g2642 WRKY 4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2642 K18835 - gmx:100127395 1504.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0966 4 12398377 12403241 Gso6g2642 6 48226455 48231300 GST