Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2640 ATGAGAGTGAAAAAAGGTGAAAAAATGAAAAGAGAGAAAGCATACCTTAGGAGGAAGATGTCATGGTCAGCAAGAAGAGTAGTGAGGTTCCTTGTGACTGCCTTATTCATCATAACCGCAGCAGAAGCAACAAACTCTGATGCGCTTCTATTGATACACTTCAAGCACTTACACGTTTCCTCCGATCCCTTCAACTTTCTCTCCGACTGGGACCCGCACGCGCCATCTCCATGCGCGTGGCGTGCTATCACCTGCTCCTCCTCCTCCGGCGACGTCACCTCCATCGACCTCGGCGGCGCCTCCCTCTCCGGCACCCTCTTCCTCCCCATTCTCACGTCCCTTCCCTCTCTTCAAAACCTAATCCTCCGTGGCAACTCCTTCTCCTCTTTCAACCTCACCGTTTCTCCACTTTGCACTCTCCAAACACTCGACCTCTCTCACAACAACTTCTCCGGCAAGTTTCCCTTCGCAGACTTTGCTCCCTGTAACCGCCTCAGCTACCTCAACCTCTCTAATAACCTCATCACCGCTGGGCTTGTGCCTGGGCCTGGGCCCTGGCCCGAGCTGGCCCAACTTGACTTGTCCAGAAACCGCGTCTCCGACGTGGAACTTCTCGTCTCCGCTCTCGGAAGCTCAACTCTCGTTTTACTTAACTTCTCCGACAACAAACTAACGGGTCAACTCAGCGAAACGCTCGTTTCGAAGAGTGCGAACCTCTCATATTTGGACCTCTCTTATAACGTTCTCTCCGGGAAGGTTCCGTCGAGGCTTCTAAACGACGCCGTTCGGGTCCTCGATTTCTCGTTCAACAATTTCTCGGAATTTGACTTCGGTTTCGGTTCGTGCAAGAATCTAGTTCGGTTGAGTTTCTCGCACAATGCAATCTCTTCGAACGAGTTTCCGCGCGGGTTGAGCAACTGCAACAATCTTGAAGTTCTAGATCTTTCTCACAATGAGTTCGCCATGGAGATTCCATCAGAAATTCTTGTCAGTTTGAAGAGTTTGAAGTCTCTGTTTCTCGCACACAACAAGTTTTCCGGCGAAATTCCGAGTGAGCTTGGAGGCCTTTGTGAAACTCTTGTTGAACTTGATCTCTCCGAGAACAAGCTTTCTGGTTCGTTGCCTTTGAGTTTCACTCAGTGTTCTTCTCTGCAGAGTCTTAACCTCGCGAGGAATTTTCTCTCTGGGAACTTGCTTGTTTCCGTGGTGAGCAAGCTTGGGAGTCTAAAGTATCTAAACGCAGCGTTTAATAACATGACGGGACCGGTTCCGTTGTCGTCGCTTGTTAACTTGAAAGAACTTCGGGTTCTTGACCTAAGCTCGAACCGGTTCAGCGGCAATGTTCCATCGTTATTTTGTCCTTCGGAGTTGGAGAAGTTGATCCTCGCTGGCAATTACCTTTCAGGGACTGTACCGTCGCAGCTCGGTGAGTGTAAGAACTTGAAAACTATTGATTTCAGCTTTAACAGTTTGAACGGTTCGATACCGTGGGAGGTGTGGTCTTTGCCTAATTTAACTGATTTGATTATGTGGGCTAATAAACTCAACGGAGAAATCCCCGAGGGGATTTGTGTTGAGGGAGGGAACTTGGAGACTTTGATTTTGAACAATAATCTAATTTCGGGGTCCATTCCGAAGTCGATTGCGAATTGCACCAACATGATATGGGTGTCGTTGGCGAGCAACCGGTTAACTGGGCAGATACCGGCTGGGATTGGGAATTTGAACGCATTGGCGATTCTTCAGCTGGGCAATAACTCGTTGAGTGGGAGGGTTCCACCGGAGATAGGCGAGTGCAGGAGATTGATATGGTTGGATTTGAATAGTAATAACCTAACTGGGGATATCCCTTTCCAGCTTGCTGATCAGGCCGGGTTTGTTATCCCGGGGAGGGTTTCGGGGAAGCAGTTTGCGTTTGTGAGGAATGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATTAGGACAGAGAGGCTTGAAGGTTTTCCCATGGTGCATTCCTGCCCGTTGACGCGGATTTACTCCGGTAGGACCGTGTATACTTTTGCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGTTGTCTGGGAGCATTCCTGAGAATTTGGGTGAGATGGCCTATTTGCAGGTGTTGAATTTGGGGCACAATAGGTTGAGTGGGAACATTCCAGATAGGTTTGGTGGTTTGAAAGCAATAGGGGTGCTTGATCTGTCTCATAATAGTCTTAATGGGTCCATCCCTGGGGCGTTGGAGGGTCTTTCTTTTCTCAGTGACCTTGATGTGTCTAATAATAATCTCAATGGGTCCATTCCTTCTGGTGGTCAGTTAACTACTTTTCCAGCTTCCAGATATGAGAACAACTCTGGCCTTTGTGGGGTGCCTTTGCCGGCGTGTGGGGCTTCAAAGAATCACTCGGTTGCTGTTGGGGATTGGAAGAAGCAGCAGCCTGTTGTAGCTGGGGTCGTCATTGGTTTGCTTTGCTTCCTCGTGTTTGCACTTGGGCTTGTGTTGGCTTTGTACCGAGTGAGGAAGGCGCAGAGGAAGGAGGAGATGAGGGAAAAGTATATAGAGAGTCTTCCAACTTCTGGGAGCAGTAGTTGGAAGCTTTCCAGCTTTCCTGAGCCTTTGAGTATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACTTTTGCGCATCTTCTTGAGGCTACTAACGGTTTCAGTGCTGAGAGTTTGATAGGTTCTGGGGGGTTTGGTGAGGTGTACAAAGCTAAGCTGAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACAATTGGGAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAAATTGGAGAGGAGAGGCTGCTTGTGTATGAGTACATGAAATGGGGAAGTCTTGAGGCTGTTTTACATGAGAGGGCAAAAGCAGGAGTTTCAAAGCTTGATTGGGCAGCAAGGAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATTCCTCACATTATACACCGGGACATGAAGTCCAGCAATATTCTTCTTGATGAAAATTTTGAGGCCAGAGTTTCTGATTTTGGCATGGCGAGATTGGTTAATGCCCTTGACACTCATCTCACAGTCAGCACGCTTGCCGGAACACCGGGCTATGTACCCCCAGAGTACTACCAGAGTTTTAGATGTACAGCAAAAGGGGATGTCTATAGCTATGGTGTCATATTGCTAGAGCTTCTATCAGGAAAGAGACCAATTGACTCTTCTGAGTTTGGTGATGACAGCAATCTTGTTGGATGGTCTAAGAAGCTTTACAAAGAGAAACGAATTAACGAAATAATTGATCCTGATTTAATTGTGCAGACATCTAGTGAAAGTGAACTATTACAATATTTGAGAATTGCTTTTGAATGTCTGGATGAGAGACCATACCGGCGGCCAACTATGATACAAGTGATGGCTATGTTTAAAGAGCTTCAGGTTGACACAGATAATGATATGCTTGATAGCTTCTCTCTCAGAGACAATGTTATTGATGAAGCTTGA 3636 0.4747 MRVKKGEKMKREKAYLRRKMSWSARRVVRFLVTALFIITAAEATNSDALLLIHFKHLHVSSDPFNFLSDWDPHAPSPCAWRAITCSSSSGDVTSIDLGGASLSGTLFLPILTSLPSLQNLILRGNSFSSFNLTVSPLCTLQTLDLSHNNFSGKFPFADFAPCNRLSYLNLSNNLITAGLVPGPGPWPELAQLDLSRNRVSDVELLVSALGSSTLVLLNFSDNKLTGQLSETLVSKSANLSYLDLSYNVLSGKVPSRLLNDAVRVLDFSFNNFSEFDFGFGSCKNLVRLSFSHNAISSNEFPRGLSNCNNLEVLDLSHNEFAMEIPSEILVSLKSLKSLFLAHNKFSGEIPSELGGLCETLVELDLSENKLSGSLPLSFTQCSSLQSLNLARNFLSGNLLVSVVSKLGSLKYLNAAFNNMTGPVPLSSLVNLKELRVLDLSSNRFSGNVPSLFCPSELEKLILAGNYLSGTVPSQLGECKNLKTIDFSFNSLNGSIPWEVWSLPNLTDLIMWANKLNGEIPEGICVEGGNLETLILNNNLISGSIPKSIANCTNMIWVSLASNRLTGQIPAGIGNLNALAILQLGNNSLSGRVPPEIGECRRLIWLDLNSNNLTGDIPFQLADQAGFVIPGRVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGRTVYTFASNGSMIYLDLSYNLLSGSIPENLGEMAYLQVLNLGHNRLSGNIPDRFGGLKAIGVLDLSHNSLNGSIPGALEGLSFLSDLDVSNNNLNGSIPSGGQLTTFPASRYENNSGLCGVPLPACGASKNHSVAVGDWKKQQPVVAGVVIGLLCFLVFALGLVLALYRVRKAQRKEEMREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKIGEERLLVYEYMKWGSLEAVLHERAKAGVSKLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDSNLVGWSKKLYKEKRINEIIDPDLIVQTSSESELLQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDMLDSFSLRDNVIDEA* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2640 1211 PRINTS Leucine-rich repeat signature 360 373 - -
Gso6g2640 1211 PRINTS Leucine-rich repeat signature 431 444 - -
Gso6g2640 1211 ProSitePatterns Protein kinases ATP-binding region signature. 918 941 IPR017441 GO:0005524
Gso6g2640 1211 Pfam Leucine rich repeat N-terminal domain 45 86 IPR013210 -
Gso6g2640 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 31 1197 - -
Gso6g2640 1211 SUPERFAMILY Protein kinase-like (PK-like) 893 1186 IPR011009 -
Gso6g2640 1211 SMART serkin_6 912 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2640 1211 Gene3D - 632 689 - -
Gso6g2640 1211 Pfam Brassinosteroid receptor island domain 625 688 IPR045381 -
Gso6g2640 1211 Gene3D Phosphorylase Kinase; domain 1 875 987 - -
Gso6g2640 1211 SUPERFAMILY L domain-like 53 396 - -
Gso6g2640 1211 ProSiteProfiles Protein kinase domain profile. 912 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2640 1211 SMART LRR_typ_2 763 786 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 502 526 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 307 331 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 332 356 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 575 599 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 715 738 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 114 137 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 431 454 IPR003591 -
Gso6g2640 1211 SMART LRR_typ_2 739 762 IPR003591 -
Gso6g2640 1211 Pfam Protein kinase domain 914 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2640 1211 Gene3D Transferase(Phosphotransferase) domain 1 988 1206 - -
Gso6g2640 1211 Gene3D Ribonuclease Inhibitor 47 160 IPR032675 -
Gso6g2640 1211 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 31 1197 - -
Gso6g2640 1211 Gene3D Ribonuclease Inhibitor 188 809 IPR032675 -
Gso6g2640 1211 Pfam Leucine Rich repeat 138 152 IPR001611 GO:0005515
Gso6g2640 1211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1035 1047 IPR008271 GO:0004672|GO:0006468
Gso6g2640 1211 SUPERFAMILY L domain-like 426 794 - -
Gso6g2640 1211 Pfam Leucine rich repeat 718 776 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2640 Gso-Chr6 48204953 48209504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2640 19 1210 Receptor kinase-like Gene Family AT1G55610 62.097 0.0 1447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso6g2640 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2640 - - gmx:100779072 2317.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0967 4 12446020 12450314 Gso6g2640 6 48204953 48209504 GST