Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2638 ATGGCTTCTTCATCGAGTAGCGGATTGACGTTCAAGCTGCACCCTCTGGTGATCGTGAACATCTCCGACCACTACACCAGGGTCAAGTCTCAGATGAACCCAACCCACGCGCCACCGCACACCACCACCAACAACAACAACGCCAACGGCGGCGACGGCGTCGTTTCGCCGCCGCTCCACCCGCGGGTCTATGGTTGCGTCATAGGGGTCCAGAAGGGTCGCACCGTTGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTTCCACCCACTCCCTCGATCGCACCTTTCTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAACCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCACCTTACTGGTACACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACACCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCTTGATGGAGTACAATGACACCGTATTGATTAGTTACCTGGCAATGCTGACCAACTGTTCAAGCTCAATGAATGAGCTGGTGGACAAATTTAATATCGCGTACGATAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA 969 0.4623 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTHAPPHTTTNNNNANGGDGVVSPPLHPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGTHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTVLISYLAMLTNCSSSMNELVDKFNIAYDRHSRRGGRTAFM* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2638 322 MobiDBLite consensus disorder prediction 29 52 - -
Gso6g2638 322 CDD MPN_CSN6 9 318 IPR033859 GO:0000338|GO:0008180
Gso6g2638 322 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 322 - -
Gso6g2638 322 Pfam Maintenance of mitochondrial structure and function 189 303 IPR024969 -
Gso6g2638 322 ProSiteProfiles MPN domain profile. 11 169 IPR037518 -
Gso6g2638 322 MobiDBLite consensus disorder prediction 29 55 - -
Gso6g2638 322 Gene3D Cytidine Deaminase, domain 2 1 203 - -
Gso6g2638 322 SMART pad1_6 10 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso6g2638 322 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso6g2638 322 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2638 Gso-Chr6 48188450 48194479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2638 2 273 Eukaryotic Initiation Factors Gene Family AT2G39990 21.661 9.82e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2638 K12179 - gmx:100786026 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0968 4 12491076 12501678 Gso6g2638 6 48188450 48194479 GST