Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2632 ATGGCTTCCAAACCTCGCACTGTAGAAGAGATCTTCAAGGACTATAGCGCCCGAAGAATCGCTATTATTCGTGCACTCACTCATGATGTTGATAAACTTTACGGGCTCTGTGATCCAGGAAAGGAGAATTTGTGCCTCTATGGACATCCGAATAAGGCTTGGGAAGTAACTCTGCCATCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAACTCTTGGAATCAATTTTGCTAGGGATGATGTGAGTCGCAGGGATTGGATTTCTTTGGTTGCTGTGCATAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTACCTTGGAATTCGTCTTAACCACAATGAAAGAAAACGCTTATTTGGTTTAATCAACATTCTTCCCACCATTTTTCAAGTTGTGACCGACAATAAACCAATTAAGGACAATCCTACTATGGATAGTGGAAGCAAATTTTGGGGAAGCACTGAGGTAGCAGCAGTTCGAAATGAGCATATTGAAATATTTTGTGGAAGTTGTGGTGGAAATTACAACAAAGATGAATTTTGGATCGGCTGTGATATTTGTGAGTGGTGGTACCATGGAAAGTGTATTATGATGACCCCTACAAAGGCTGAGACCCTAAAGCACTATAAATGTGCATCATGCAGCTTAAGGAGAGGCAGGTTATAG 663 0.4253 MASKPRTVEEIFKDYSARRIAIIRALTHDVDKLYGLCDPGKENLCLYGHPNKAWEVTLPSEEVPPELPEPTLGINFARDDVSRRDWISLVAVHSDSWLLSVAFYLGIRLNHNERKRLFGLINILPTIFQVVTDNKPIKDNPTMDSGSKFWGSTEVAAVRNEHIEIFCGSCGGNYNKDEFWIGCDICEWWYHGKCIMMTPTKAETLKHYKCASCSLRRGRL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2632 220 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 154 - -
Gso6g2632 220 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 160 219 - -
Gso6g2632 220 CDD PHD_AL_plant 166 216 IPR044104 -
Gso6g2632 220 SUPERFAMILY FYVE/PHD zinc finger 163 218 IPR011011 -
Gso6g2632 220 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Gso6g2632 220 PANTHER CPG BINDING PROTEIN 160 219 IPR045104 GO:0006355|GO:0042393
Gso6g2632 220 PANTHER CPG BINDING PROTEIN 2 154 IPR045104 GO:0006355|GO:0042393
Gso6g2632 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 214 IPR013083 -
Gso6g2632 220 ProSitePatterns Zinc finger PHD-type signature. 167 213 IPR019786 -
Gso6g2632 220 SMART PHD_3 166 214 IPR001965 -
Gso6g2632 220 Pfam PHD-finger 166 214 IPR019787 -
Gso6g2632 220 ProSiteProfiles Zinc finger PHD-type profile. 164 216 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2632 Gso-Chr6 48144747 48147304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2632 2 219 Alfin-like Transcription Factor Family AT5G05610 62.712 1.02e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g2632 Alfin 9e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2632 - - gmx:100784077 466.077