Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2625 ATGGAAACCCTTATTGGAAAAACATTCCTCACACTCTTATTTTTATCTTCAGTTTTCTCAATAGTCTCGTCAAGTAGTGGACCAGCTCCATCCAGCAACATAGATTGGTGGTGCAACCTAACCCCACACCCTGTGCCATGCAAACACTACACCATTACTCAAATGAAGAGCCATCATTTCCAAATCAAGCACAAAACTGTCTTCCGGGAAATGCTTCTTCAACATGCCTTAAACCAAGCCCTCATCATGCAAAAAGAAGCACATGAATCTCACCAAAACAGCATGGCAACAAAGAACCACAGAACCGTGAATGAAGATTGTTTGAAGCTCTATGGAAAAACCATCTTCCACCTCAACCGCACCCTTGAGTGCTTTCATGGGAAGCAAAACTGTTCATCAGTTGATGCACAAACATGGCTCAGCACTTCTCTCACAAACATTCAAACGTGTCAAGATGGCACGGTTGAACTTGCTGTTGAAGATTTCGAAGTTCCCAACAACAATGTTTCTGAGATGATAAGGAACAGCTTGGCTATCAACATGGACTTCATGAATCATCATCACCACATGGAAGAAAAACCAGGAGATGCGTTTCCAAGGTGGTTTTCAAAGCATGAGAGGAAACTGTTGCAGTCTTCAATGATAAAGGCACGTATTGTTGTGGCGAAAGATGGTTCGGGGAATTTCAAGACTGTGCAAGATGCTCTCAATGCTGCGGCAAAGAGGAAAGAGAAAACAAGATTTGTGATACATGTCAAGAAAGGAGTATATAGAGAGAATATTGAGGTTGCTCTGCACAATGATAACATCATGCTGGTTGGTGATGGGTTGAGAAATACCATAATCACCAGTGCCAGAAGTGTTCAAGATGGTTATACTACTTATAGTTCTGCAACTGCTGGAATAGACGGCCTCCACTTTATTGCACGCGACATCACCTTCCAAAACAGTGCTGGTGTTCACAAGGGTCAAGCTGTGGCTCTCCGATCGGCCTCAGACCTCTCCGTCTTCTACCGGTGTGGCATAATGGGCTACCAAGACACCCTCATGGCTCATGCACAACGCCAATTTTACCGCCAATGCTACATCTATGGCACAGTTGACTTCATCTTTGGTAATGCTGCAGTGGTATTCCAAAATTGTTACATTTTCGCAAGAAGACCCTTAGAAGGCCAAGCCAACATGATCACTGCCCAAGGTCGAGGTGACCCATTTCAAAATACTGGAATTTCAATCCACAACTCTCAAATTCGGGCAGCTCCTGATCTCAAGCCTGTTGTTGACAAGTACAACACTTTCTTGGGTAGGCCTTGGCAACAATACTCTAGAGTGGTGGTCATGAAAACGTTCATGGACACCTTGGTGAACCCATTGGGTTGGTCTCCATGGGGTGATTCTGATTTTGCTCAGGACACAGTTTATTATGGAGAATATCAAAATTATGGGCCTAGAGCATCTACAACCAATAGAGTAAAATGGCCTGGTTTTCATGTGATTACTAGCCCAACTGAAGCGTCACAGTTTACTGTCACACGCCTCCTTGCTGGCCCAACATGGTTGGGTTCTACAACCGTGCCATTTACCTCTGGCCTGTGA 1596 0.4436 METLIGKTFLTLLFLSSVFSIVSSSSGPAPSSNIDWWCNLTPHPVPCKHYTITQMKSHHFQIKHKTVFREMLLQHALNQALIMQKEAHESHQNSMATKNHRTVNEDCLKLYGKTIFHLNRTLECFHGKQNCSSVDAQTWLSTSLTNIQTCQDGTVELAVEDFEVPNNNVSEMIRNSLAINMDFMNHHHHMEEKPGDAFPRWFSKHERKLLQSSMIKARIVVAKDGSGNFKTVQDALNAAAKRKEKTRFVIHVKKGVYRENIEVALHNDNIMLVGDGLRNTIITSARSVQDGYTTYSSATAGIDGLHFIARDITFQNSAGVHKGQAVALRSASDLSVFYRCGIMGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCYIFARRPLEGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLKPVVDKYNTFLGRPWQQYSRVVVMKTFMDTLVNPLGWSPWGDSDFAQDTVYYGEYQNYGPRASTTNRVKWPGFHVITSPTEASQFTVTRLLAGPTWLGSTTVPFTSGL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2625 531 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Gso6g2625 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
Gso6g2625 531 PANTHER PECTINESTERASE 4 530 - -
Gso6g2625 531 SMART PMEI_2 29 179 IPR006501 GO:0004857
Gso6g2625 531 SUPERFAMILY Pectin lyase-like 213 530 IPR011050 -
Gso6g2625 531 CDD PMEI-like_3 36 180 - -
Gso6g2625 531 PANTHER PECTINESTERASE 4 530 - -
Gso6g2625 531 Pfam Pectinesterase 219 516 IPR000070 GO:0030599|GO:0042545
Gso6g2625 531 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 180 IPR006501 GO:0004857
Gso6g2625 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Gso6g2625 531 Gene3D - 212 531 IPR012334 -
Gso6g2625 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2625 Gso-Chr6 48072552 48074900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2625 31 531 Carbohydrate Esterase AT5G51500 55.969 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2625 K01051 - gmx:100800413 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0982 4 13434677 13437351 Gso6g2625 6 48072552 48074900 GST