Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2624 ATGGCCAAAAGTCTTGGCCTAATCATTGTCTTCATATCCTTGCTTTCTCTGTCTTCCCCAACCCTTTCAAGCATTTTCTCCAATACCGTTGATTTTTGGTGCAACCAAACCCCACATCCTCAAACATGCAAGCATTTTGTCACAATAAATAGTCATCGTCTTCAAGATGGTATCCCAAAAAGTGCATTTCAATTTAAAAACTTCATCCTTCAAATTGCAATGGACCAATCAGTGAAAGCTCAAATTCACATCATGTGGTTGGGCTCAAAATGTAGAAGCAAGCAAGAAAAAGCAGCGTGGTCAGATTGTACAACCCTCTATCAAGACACCATCAACATCCTCAACCAAGCACTTAACCCTACCAAACAAAGCACAAGCTATGATCTCCAAACATGGCTTAGCACAGCCTTAACCAACATTGACACGTGCCAAACCGGGTTCCACGAGCTTGGTGTTGGCAACAATGTTCTATCCCTCATTCCCAACAAGAATGTCTCAGAGATCATAAGCGACTTCTTGGCTCTAAACAATGCTTCCTCATTTATTCCTCCAAAAAAGACTTACAAAAATGGCTTACCAAGATGGTTACCACCCAATGATAGGAAGCTTCTAGAGTCATCACCACCATCGTTATCACCAGATTTTGTGGTGGCTAAAGATGGTTCGGGGGATTTTAAGACCATCAAAGAAGCTTTGAAAGCAATTCCCAAGAGAAATGAGGCCAAGAGGTTTGTGATATATGTTAAGCGTGGGATTTACAATGAAAACATTGAGATTGGGAATTCTATGAAGAATATTATGTTGTATGGTGATGGTACAAGGCTCACCATCATTTCTGGTAGCCGAAGTGTTGGAGGAGGTTCTACCACTTTTAATTCGGCCACGGTTGCTGTGACAGGAGATGGGTTCATAGCACGTGGCATCACATTCCGCAACACAGCAGGCCCAGAAAACCACCAAGCAGTGGCACTGCGTTGTGGTGCTGACCTCTCTGTATTCTATCGCTGTGCATTTGAAGGCTACCAAGACACTCTCTATGTCCACTCCCAAAGGCAATTTTACAAGGAATGCAACATTTATGGCACTGTGGACTTCATCTTTGGCAATGCCGCTGTGGTTTTCCAATCCTGCAATATATATGCAAGAAGGCCAATGCAGAAACAGAAAAATGCTATAACAGCACAAGGTAGAACAGATCCTAATCAAAACACTGGGATTTGCATTCAAAACTCGCGTGTCATGGCTGCTGAAGACCTAGTTCCTGTGCTGAGTTCCTTCAAAACCTTCTTGGGCAGGCCATGGAGGGAATATTCAAGGACCGTGTTCTTGCAAACTTACCTTGATTTGTTGGTAGACCCTGCAGGGTGGTTGGAGTGGAAAGGCGATTTTGCCCTCCACACTTTGTATTATGGAGAGTACAAGAACCTTGGTCCTAGGGGTTCCACAAGAGGTAGAGTGAAATGGGGTGGTTACCATGCCATAACAAGTGCAACCGAAGCATCCAAATTCACAGTTGAGAATTTTATTGCTGGGAAATCATGGTTACCAGCCACAGGGATTCCTTTCTTATTTGGACTCGATGATTAA 1587 0.4342 MAKSLGLIIVFISLLSLSSPTLSSIFSNTVDFWCNQTPHPQTCKHFVTINSHRLQDGIPKSAFQFKNFILQIAMDQSVKAQIHIMWLGSKCRSKQEKAAWSDCTTLYQDTINILNQALNPTKQSTSYDLQTWLSTALTNIDTCQTGFHELGVGNNVLSLIPNKNVSEIISDFLALNNASSFIPPKKTYKNGLPRWLPPNDRKLLESSPPSLSPDFVVAKDGSGDFKTIKEALKAIPKRNEAKRFVIYVKRGIYNENIEIGNSMKNIMLYGDGTRLTIISGSRSVGGGSTTFNSATVAVTGDGFIARGITFRNTAGPENHQAVALRCGADLSVFYRCAFEGYQDTLYVHSQRQFYKECNIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNAITAQGRTDPNQNTGICIQNSRVMAAEDLVPVLSSFKTFLGRPWREYSRTVFLQTYLDLLVDPAGWLEWKGDFALHTLYYGEYKNLGPRGSTRGRVKWGGYHAITSATEASKFTVENFIAGKSWLPATGIPFLFGLDD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2624 528 SUPERFAMILY Pectin lyase-like 211 525 IPR011050 -
Gso6g2624 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Gso6g2624 528 PANTHER PECTINESTERASE 8 525 - -
Gso6g2624 528 SMART PMEI_2 25 175 IPR006501 GO:0004857
Gso6g2624 528 CDD PMEI-like_3 33 178 - -
Gso6g2624 528 PANTHER PECTINESTERASE 8 525 - -
Gso6g2624 528 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Gso6g2624 528 Gene3D - 209 526 IPR012334 -
Gso6g2624 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Gso6g2624 528 Pfam Pectinesterase 214 511 IPR000070 GO:0030599|GO:0042545
Gso6g2624 528 Pfam Plant invertase/pectin methylesterase inhibitor 29 175 IPR006501 GO:0004857
Gso6g2624 528 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2624 Gso-Chr6 48049506 48053332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2624 8 526 Carbohydrate Esterase AT2G45220 57.885 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2624 K01051 - gmx:100776412 1045.8