Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2619 ATGAAATTGTGCATAGACCTGGATCCAATGGACCCGAAGCCAAATCTTAACCCTGTCCTTACTGATGCCACACCCTTAACAAGGTCAAGGCTTGGTGTGCCTTCTGGTTTGTCACCTTACTCTCCTAAAGGGGCAACCTTTCCCCATGGTACCATGCTGGCAATACCAAGGAAGAAGACAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGGCTGGATGCGATGAAATCGTCTTCTCCTACTCACAATAAAGTATCCAAGGATCTTGGTCATGGGATTGGATCACCTGATGCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTTGCATCTTTTGATCAAATTACCAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATATGCGTGCTGCTGTTAAAAAAGTGGCGGAATATTTTCCAACCGCGATAATTAGTGGAAGAAGCCGTGACAAGGTATATGAATTTGTTGGACTAAGTGAGCTCTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCTAGACAATCTAATTCTGATAATCACCCTGATTGCATAAGGTCTTCTGACCAGCAGGTTGTTGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTAATGAGGTACGTGGGTTGCTCAAGGAGTGTATAAAAGATATAGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGGAGAGTTGGCAAATTGTGGGACAACATGTATATGATATTCTGAAGGAGTATCCACGTCTGCGTGTCACTCATGGCCGGAAGGTTTTAGAGGTTCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTCTACTTGAGTCACTTGGACTTAACAATTGCGATGACGTGCTAGCTATATATGTTGGAGATGATAGAACAGATGAAGATGCATTCAAGGTTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTAGTGTCCCCTGCCCCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCCTGTGAGGTCATGGAATTTCTGACATCACTTGCTGTATGGAAATCAAGCATTCAAGCTCGCTGA 1179 0.4283 MKLCIDLDPMDPKPNLNPVLTDATPLTRSRLGVPSGLSPYSPKGATFPHGTMLAIPRKKTGILDDFRSSGWLDAMKSSSPTHNKVSKDLGHGIGSPDAAYSTWLLKFPSALASFDQITNCAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFVGLSELYYAGSHGMDIIGPPRQSNSDNHPDCIRSSDQQVVEVNLFQPAAEFLPMINEVRGLLKECIKDIEGATVENNKFCVSVHYRNVDEESWQIVGQHVYDILKEYPRLRVTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNNCDDVLAIYVGDDRTDEDAFKVLREVNKGCGILVSPAPKESNAIYSLRDPCEVMEFLTSLAVWKSSIQAR* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2619 392 CDD HAD_TPP 127 377 - -
Gso6g2619 392 SUPERFAMILY HAD-like 127 384 IPR036412 -
Gso6g2619 392 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 128 346 IPR006379 -
Gso6g2619 392 TIGRFAM T6PP: trehalose-phosphatase 123 383 IPR003337 GO:0003824|GO:0005992
Gso6g2619 392 Pfam Trehalose-phosphatase 129 372 IPR003337 GO:0003824|GO:0005992
Gso6g2619 392 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 11 392 - -
Gso6g2619 392 Gene3D - 224 391 IPR023214 -
Gso6g2619 392 Gene3D - 126 209 IPR023214 -
Gso6g2619 392 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 11 392 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2619 Gso-Chr6 47981373 47987415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2619 122 383 Trehalose Biosynthesis Gene Families AT1G70290 25.448 4.97e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2619 K01087 - gmx:100783008 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0985 4 13694775 13700644 Gso6g2619 6 47981373 47987415 GST